RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SYNPOQ8N3V7 929 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 DDX1Q92499 740 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 KIF12Q96FN5 646 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 HSFX1Q9UBD0 423 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 TUBGCP4Q9UGJ1 667 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 SPAG17Q6Q759 2223 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 A0A1W2PRU2 124 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 TTC26A0AVF1 554 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 NRG2O14511 850 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 MEFVO15553 781 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 ADRB1P08588 477 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 CXCL8P10145 99 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 GJA1P17302 382 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 TYMPP19971 482 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 WEE1P30291 646 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 PLCB2Q00722 1185 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 PPP2R3AQ06190 1150 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 DUSP4Q13115 394 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 NBR1Q14596 966 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 CSRP2Q16527 193 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 LPAL2Q16609 132 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 ARMCX5Q6P1M9 558 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 DSTYKQ6XUX3 929 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 TMC8Q8IU68 726 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 BICD1Q96G01 975 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 LRRC3Q9BY71 257 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 SH2B1Q9NRF2 756 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 SEMA4GQ9NTN9 838 aa16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 LARSQ9P2J5 1176 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-201ENST00000301897 NUP210Q8TEM1 1887 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 MYBPHLA2RUH7 354 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 SFI1A8K8P3 1242 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 SPECC1L-ADORA2AF8WAN1 911 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 PTPAQ15257 358 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 ZBTB6Q15916 424 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 HYIQ5T013 277 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 OVOS1Q6IE37 1185 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 PRR23CQ6ZRP0 262 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 ARID3BQ8IVW6 561 aaPredicted RBP16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 KCNN1Q92952 543 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 PSMG2Q969U7 264 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 DNAJC25Q9H1X3 360 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 ZMYM5Q9UJ78 669 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 KIF3AQ9Y496 699 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 PCDHB6Q9Y5E3 794 aa16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.06■□□□□ 0.16
CCDC88B-201ENST00000301897 CEP295Q9C0D2 2601 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 SDK1Q7Z5N4 2213 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 NCANO14594 1321 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 SLC38A8A6NNN8 435 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 PP2D1A8MPX8 630 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 CHURC1-FNTBB4DL54 471 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 HRO43593 1189 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 ODC1P11926 461 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 CTHP32929 405 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 FNTBP49356 437 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 TOB1P50616 345 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 GAS6Q14393 721 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 SEZ6Q53EL9 994 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 PPM1JQ5JR12 505 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 CENPPQ6IPU0 288 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 CEP68Q76N32 757 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 KCNK18Q7Z418 384 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 CD302Q8IX05 232 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 SYT2Q8N9I0 419 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 PGLYRP2Q96PD5 576 aa16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 MMTAG2Q9BU76 263 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 THG1LQ9NWX6 298 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 TIMM13Q9Y5L4 95 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-201ENST00000301897 USP24Q9UPU5 2620 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 MTMR11A4FU01 709 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 K7ESF4 209 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 VNN2O95498 520 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 NEFLP07196 543 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 CDC25AP30304 524 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 ABCD1P33897 745 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 TUFMP49411 452 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 LIG4P49917 911 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 RAD51AP2Q09MP3 1159 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 VEPH1Q14D04 833 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 GAREM2Q75VX8 874 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 DNAJB7Q7Z6W7 309 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 WDR5BQ86VZ2 330 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 RSPRY1Q96DX4 576 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 CDK5RAP3Q96JB5 506 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 GCNAQ96QF7 691 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 ATXN3LQ9H3M9 355 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 RPF1Q9H9Y2 349 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 CHD6Q8TD26 2715 aa16.04■□□□□ 0.16
CCDC88B-201ENST00000301897 LACTBL1A8MY62 500 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 HNRNPDLO14979 420 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 OGTO15294 1046 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 SLC26A4O43511 780 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 ADRB2P07550 413 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 OR4Q2P0C623 313 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 GABRR2P28476 465 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 CDC25CP30307 473 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 NCKAP1LP55160 1127 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 LILRA4P59901 499 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms