RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 LRRC8DQ7L1W4 858 aa15.06■□□□□ 0
SS18-201ENST00000269137 ZNF606Q8WXB4 792 aa15.06■□□□□ 0
SS18-201ENST00000269137 RFFLQ8WZ73 363 aa15.06■□□□□ 0
SS18-201ENST00000269137 PGBD4Q96DM1 585 aa15.06■□□□□ 0
SS18-201ENST00000269137 ZFP42Q96MM3 310 aa15.06■□□□□ 0
SS18-201ENST00000269137 ZNF560Q96MR9 790 aa15.06■□□□□ 0
SS18-201ENST00000269137 UBN1Q9NPG3 1134 aa15.06■□□□□ 0
SS18-201ENST00000269137 JRKLQ9Y4A0 524 aa15.06■□□□□ 0
SS18-201ENST00000269137 ARL5CA6NH57 179 aa15.05■□□□□ -0
SS18-201ENST00000269137 MEIS3P2A8K0S8 358 aa15.05■□□□□ -0
SS18-201ENST00000269137 RIOK3O14730 519 aaKnown RBP15.05■□□□□ -0
SS18-201ENST00000269137 PPEF2O14830 753 aa15.05■□□□□ -0
SS18-201ENST00000269137 THAP12O43422 761 aa15.05■□□□□ -0
SS18-201ENST00000269137 BUB1O43683 1085 aa15.05■□□□□ -0
SS18-201ENST00000269137 URI1O94763 535 aaPredicted RBP15.05■□□□□ -0
SS18-201ENST00000269137 RAP1GAPP47736 663 aa15.05■□□□□ -0
SS18-201ENST00000269137 CDH8P55286 799 aa15.05■□□□□ -0
SS18-201ENST00000269137 SOX4Q06945 474 aaPredicted RBP15.05■□□□□ -0
SS18-201ENST00000269137 PPP1R2P3Q6NXS1 205 aa15.05■□□□□ -0
SS18-201ENST00000269137 ANKRD33Q7Z3H0 272 aa15.05■□□□□ -0
SS18-201ENST00000269137 WHAMMQ8TF30 809 aa15.05■□□□□ -0
SS18-201ENST00000269137 CALR3Q96L12 384 aaKnown RBP15.05■□□□□ -0
SS18-201ENST00000269137 GAD1Q99259 594 aa15.05■□□□□ -0
SS18-201ENST00000269137 RGS18Q9NS28 235 aa15.05■□□□□ -0
SS18-201ENST00000269137 RNF19AQ9NV58 838 aa15.05■□□□□ -0
SS18-201ENST00000269137 GDAP2Q9NXN4 497 aa15.05■□□□□ -0
SS18-201ENST00000269137 BARX2Q9UMQ3 279 aaPredicted RBP15.05■□□□□ -0
SS18-201ENST00000269137 MLH1P40692 756 aa15.04■□□□□ -0
SS18-201ENST00000269137 RAD23BP54727 409 aa15.04■□□□□ -0
SS18-201ENST00000269137 HADHBP55084 474 aaKnown RBP15.04■□□□□ -0
SS18-201ENST00000269137 NAP1L1P55209 391 aaKnown RBP15.04■□□□□ -0
SS18-201ENST00000269137 GPC5P78333 572 aa15.04■□□□□ -0
SS18-201ENST00000269137 CENPCQ03188 943 aa15.04■□□□□ -0
SS18-201ENST00000269137 PAPD7Q5XG87 772 aaKnown RBP15.04■□□□□ -0
SS18-201ENST00000269137 ZNF598Q86UK7 904 aaKnown RBP15.04■□□□□ -0
SS18-201ENST00000269137 LPPQ93052 612 aa15.04■□□□□ -0
SS18-201ENST00000269137 RPS6KC1Q96S38 1066 aa15.04■□□□□ -0
SS18-201ENST00000269137 FTHL17Q9BXU8 183 aa15.04■□□□□ -0
SS18-201ENST00000269137 THAP2Q9H0W7 228 aa15.04■□□□□ -0
SS18-201ENST00000269137 INPPL1O15357 1258 aa15.03■□□□□ -0
SS18-201ENST00000269137 LSM8O95777 96 aaKnown RBP15.03■□□□□ -0
SS18-201ENST00000269137 TFRCP02786 760 aaKnown RBP15.03■□□□□ -0
SS18-201ENST00000269137 THP07101 528 aa15.03■□□□□ -0
SS18-201ENST00000269137 ABCB4P21439 1286 aa15.03■□□□□ -0
SS18-201ENST00000269137 FAM189BP81408 668 aa15.03■□□□□ -0
SS18-201ENST00000269137 ZNF394Q53GI3 561 aa15.03■□□□□ -0
SS18-201ENST00000269137 C1orf53Q5VUE5 145 aa15.03■□□□□ -0
SS18-201ENST00000269137 SLC39A5Q6ZMH5 540 aa15.03■□□□□ -0
SS18-201ENST00000269137 LIMS2Q7Z4I7 341 aa15.03■□□□□ -0
SS18-201ENST00000269137 RTN4RL1Q86UN2 441 aaPredicted RBP15.03■□□□□ -0
SS18-201ENST00000269137 ECHDC2Q86YB7 292 aa15.03■□□□□ -0
SS18-201ENST00000269137 RHOT2Q8IXI1 618 aa15.03■□□□□ -0
SS18-201ENST00000269137 MYRIPQ8NFW9 859 aa15.03■□□□□ -0
SS18-201ENST00000269137 TPCN2Q8NHX9 752 aa15.03■□□□□ -0
SS18-201ENST00000269137 TOX2Q96NM4 488 aa15.03■□□□□ -0
SS18-201ENST00000269137 MMS19Q96T76 1030 aa15.03■□□□□ -0
SS18-201ENST00000269137 ZSWIM1Q9BR11 485 aa15.03■□□□□ -0
SS18-201ENST00000269137 PDCL3Q9H2J4 239 aa15.03■□□□□ -0
SS18-201ENST00000269137 RSAD1Q9HA92 442 aa15.03■□□□□ -0
SS18-201ENST00000269137 KIAA1257Q9ULG3 409 aa15.03■□□□□ -0
SS18-201ENST00000269137 PCDHGC3Q9UN70 934 aa15.03■□□□□ -0
SS18-201ENST00000269137 SNX9Q9Y5X1 595 aa15.03■□□□□ -0
SS18-201ENST00000269137 MRFAP1Q9Y605 127 aa15.03■□□□□ -0
SS18-201ENST00000269137 GRID2IPA4D2P6 1211 aa15.03■□□□□ -0
SS18-201ENST00000269137 KPNA7A9QM74 516 aa15.03■□□□□ -0
SS18-201ENST00000269137 C9IYK1 514 aa15.03■□□□□ -0
SS18-201ENST00000269137 EOMESO95936 686 aa15.03■□□□□ -0
SS18-201ENST00000269137 CYP1A2P05177 515 aa15.03■□□□□ -0
SS18-201ENST00000269137 NOP2P46087 812 aaKnown RBP15.03■□□□□ -0
SS18-201ENST00000269137 TAF6P49848 677 aa15.03■□□□□ -0
SS18-201ENST00000269137 NOMO3P69849 1222 aa15.03■□□□□ -0
SS18-201ENST00000269137 AMPD2Q01433 879 aa15.03■□□□□ -0
SS18-201ENST00000269137 SV2CQ496J9 727 aa15.03■□□□□ -0
SS18-201ENST00000269137 SLC24A5Q71RS6 500 aa15.03■□□□□ -0
SS18-201ENST00000269137 LRRC57Q8N9N7 239 aa15.03■□□□□ -0
SS18-201ENST00000269137 SLC4A11Q8NBS3 891 aa15.03■□□□□ -0
SS18-201ENST00000269137 SLC35G2Q8TBE7 412 aa15.03■□□□□ -0
SS18-201ENST00000269137 TFAP2BQ92481 460 aa15.03■□□□□ -0
SS18-201ENST00000269137 ARHGEF26Q96DR7 871 aa15.03■□□□□ -0
SS18-201ENST00000269137 CYFIP2Q96F07 1278 aa15.03■□□□□ -0
SS18-201ENST00000269137 TMEM176AQ96HP8 235 aa15.03■□□□□ -0
SS18-201ENST00000269137 VCPIP1Q96JH7 1222 aa15.03■□□□□ -0
SS18-201ENST00000269137 ZNF518BQ9C0D4 1074 aa15.03■□□□□ -0
SS18-201ENST00000269137 ELOVL4Q9GZR5 314 aa15.03■□□□□ -0
SS18-201ENST00000269137 TSPYL2Q9H2G4 693 aaPredicted RBP15.03■□□□□ -0
SS18-201ENST00000269137 MIOSQ9NXC5 875 aa15.03■□□□□ -0
SS18-201ENST00000269137 PUF60Q9UHX1 559 aaKnown RBP15.03■□□□□ -0
SS18-201ENST00000269137 CDC23Q9UJX2 597 aa15.03■□□□□ -0
SS18-201ENST00000269137 GTF3C4Q9UKN8 822 aa15.03■□□□□ -0
SS18-201ENST00000269137 MED7O43513 233 aa15.02■□□□□ -0
SS18-201ENST00000269137 PQBP1O60828 265 aaKnown RBP15.02■□□□□ -0
SS18-201ENST00000269137 PALMO75781 387 aa15.02■□□□□ -0
SS18-201ENST00000269137 MTA2O94776 668 aa15.02■□□□□ -0
SS18-201ENST00000269137 ATP1A1P05023 1023 aaKnown RBP15.02■□□□□ -0
SS18-201ENST00000269137 CFHP08603 1231 aa15.02■□□□□ -0
SS18-201ENST00000269137 FAM163BP0C2L3 166 aa15.02■□□□□ -0
SS18-201ENST00000269137 MYBL1P10243 752 aa15.02■□□□□ -0
SS18-201ENST00000269137 COL6A1P12109 1028 aa15.02■□□□□ -0
SS18-201ENST00000269137 BRD2P25440 801 aaKnown RBP15.02■□□□□ -0
SS18-201ENST00000269137 RPL9P32969 192 aaKnown RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms