RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ZNF518BQ9C0D4 1074 aa13.76□□□□□ -0.21
SPTLC1-201ENST00000262554 XYLT2Q9H1B5 865 aa13.76□□□□□ -0.21
SPTLC1-201ENST00000262554 GBA2Q9HCG7 927 aaPredicted RBP13.76□□□□□ -0.21
SPTLC1-201ENST00000262554 TCRBV7S2A1N4TA0A589 114 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 H3BRB1 525 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 GPR25O00155 361 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 PSTPIP1O43586 416 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 KRT19P08727 400 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 WEE2P0C1S8 567 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 MMP8P22894 467 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 GRB14Q14449 540 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 SIX1Q15475 284 aaPredicted RBP13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 KYAT1Q16773 422 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 TTC27Q6P3X3 843 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 MTHFD1LQ6UB35 978 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 SCARA5Q6ZMJ2 495 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 TMC3Q7Z5M5 1100 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 RHOT1Q8IXI2 618 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 C1orf131Q8NDD1 294 aaKnown RBP13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 FEZF2Q8TBJ5 459 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 UBLCP1Q8WVY7 318 aaPredicted RBP13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 TUT1Q9H6E5 874 aaKnown RBP13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 PARP2Q9UGN5 583 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 LCMT1Q9UIC8 334 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 PRDM4Q9UKN5 801 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 ZHX1Q9UKY1 873 aaPredicted RBP13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 CEP83Q9Y592 693 aa13.75□□□□□ -0.21
SPTLC1-201ENST00000262554 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 TLR3O15455 904 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 VTNP04004 478 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 STAG3L1P0CL83 205 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 BRD2P25440 801 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 MAN1A1P33908 653 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ACTN2P35609 894 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 FLT3P36888 993 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ASPAP45381 313 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 DHX9Q08211 1270 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 DUSP28Q4G0W2 176 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ZNF394Q53GI3 561 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ZNF667Q5HYK9 610 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 CEP85LQ5SZL2 805 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 PLEKHH3Q7Z736 793 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 TMEM192Q8IY95 271 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 C2orf69Q8N8R5 385 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 NLRP7Q8WX94 980 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 DDX27Q96GQ7 796 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 FAXDC2Q96IV6 333 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 MAML3Q96JK9 1138 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 PPP1R16BQ96T49 567 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ABHD16BQ9H3Z7 469 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 PDZD7Q9H5P4 517 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 LRRC19Q9H756 370 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 IP6K2Q9UHH9 426 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 PCDHGC3Q9UN70 934 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 PASKQ96RG2 1323 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 LACTBL1A8MY62 500 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 PPFIA2O75334 1257 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 UAP1Q16222 522 aaPredicted RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 AMHR2Q16671 573 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 FAM110CQ1W6H9 321 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 SGO2Q562F6 1265 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 SPDYCQ5MJ68 293 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 OR6J1Q8NGC5 347 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 CPB2Q96IY4 423 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 SCLT1Q96NL6 688 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ASB7Q9H672 318 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 ZDHHC18Q9NUE0 388 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 NXF1Q9UBU9 619 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 SNX24Q9Y343 169 aa13.74□□□□□ -0.21
SPTLC1-201ENST00000262554 HMGB1P1B2RPK0 211 aaPredicted RBP13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 MED7O43513 233 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 CSDE1O75534 798 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 ECEL1O95672 775 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 MMP3P08254 477 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 NFICP08651 508 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 SMPD1P17405 629 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 EIF4BP23588 611 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 PLTPP55058 493 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 LACTBP83111 547 aaPredicted RBP13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 ACVR2BQ13705 512 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 GRIK4Q16099 956 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 DGKDQ16760 1214 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 KCTD19Q17RG1 926 aaPredicted RBP13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 SPRYD7Q5W111 196 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 IQSEC1Q6DN90 963 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 JADE1Q6IE81 842 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 CCDC50Q8IVM0 306 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 TINF2Q9BSI4 451 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 BCO2Q9BYV7 579 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 SLC5A4Q9NY91 659 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 POLIQ9UNA4 740 aa13.73□□□□□ -0.21
SPTLC1-201ENST00000262554 MYZAPP0CAP1 466 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 HOXD8P13378 290 aaPredicted RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ARF4P18085 180 aaPredicted RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ATICP31939 592 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 CDH5P33151 784 aaPredicted RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 SSR1P43307 286 aaKnown RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 RPL21P46778 160 aaKnown RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 TAP1Q03518 808 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 PPP1R7Q15435 360 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms