RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ANKFY1Q9P2R3 1169 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 PGM3O95394 542 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 BGNP21810 368 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 NRLP54845 237 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 TAS2R40P59535 323 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 IRX4P78413 519 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 ALCAMQ13740 583 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 SMAD1Q15797 465 aaKnown RBP15.17■□□□□ 0.02
SDC1-201ENST00000254351 CTC1Q2NKJ3 1217 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 ZC3H12AQ5D1E8 599 aaKnown RBP15.17■□□□□ 0.02
SDC1-201ENST00000254351 LENG9Q96B70 501 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 CFAP57Q96MR6 1250 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 PHF12Q96QT6 1004 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 C11orf70Q9BRQ4 267 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 C6orf229H3BNL8 230 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 PLSCR1O15162 318 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 CYP3A4P08684 503 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 MYL2P10916 166 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 CLEC4GQ6UXB4 293 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 DENND1AQ8TEH3 1009 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 PYDC1Q8WXC3 89 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 POMGNT1Q8WZA1 660 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 NSL1Q96IY1 281 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 FAM111AQ96PZ2 611 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 TMEM121Q9BTD3 319 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 NMUR2Q9GZQ4 415 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 SYNCQ9H7C4 482 aa15.17■□□□□ 0.02
SDC1-201ENST00000254351 NOCTQ9UK39 431 aaKnown RBP15.17■□□□□ 0.02
SDC1-201ENST00000254351 GDF11O95390 407 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 CFHP08603 1231 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 HMGB2P26583 209 aaKnown RBP15.16■□□□□ 0.02
SDC1-201ENST00000254351 CBWD2Q8IUF1 395 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 RIBC1Q8N443 379 aaPredicted RBP15.16■□□□□ 0.02
SDC1-201ENST00000254351 ABTB1Q969K4 478 aaPredicted RBP15.16■□□□□ 0.02
SDC1-201ENST00000254351 MECRQ9BV79 373 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 GPRC5CQ9NQ84 441 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 ARHGAP42A6NI28 874 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 PPP4CP60510 307 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 ZRSR2Q15696 482 aaKnown RBP15.16■□□□□ 0.02
SDC1-201ENST00000254351 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.16■□□□□ 0.02
SDC1-201ENST00000254351 C1orf186Q6ZWK4 172 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 ZFPM1Q8IX07 1006 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 CCDC89Q8N998 374 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 FNBP1Q96RU3 617 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 TSSK1BQ9BXA7 367 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 TRIM55Q9BYV6 548 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 EBF3Q9H4W6 596 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 MANSC1Q9H8J5 431 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 PPARGC1AQ9UBK2 798 aaKnown RBP15.16■□□□□ 0.02
SDC1-201ENST00000254351 LGALS13Q9UHV8 139 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 SERPINB13Q9UIV8 391 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 ROBO3Q96MS0 1386 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 SCN7AQ01118 1682 aa15.16■□□□□ 0.02
SDC1-201ENST00000254351 SGK1O00141 431 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 CREB3O43889 395 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 RNASEH1O60930 286 aaKnown RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 SORBS2O94875 1100 aaKnown RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 ALDH18A1P54886 795 aaKnown RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 SLC45A4Q5BKX6 768 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 C1orf146Q5VVC0 180 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 LPCAT4Q643R3 524 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 GRK7Q8WTQ7 553 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 SNRNP27Q8WVK2 155 aaKnown RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 CD209Q9NNX6 404 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 DDX18Q9NVP1 670 aaKnown RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 GALNT8Q9NY28 637 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 KIAA1551Q9HCM1 1747 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 hCG_1984214I3L0E3 225 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 APBA3O96018 575 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 ZNF713Q8N859 430 aaPredicted RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 IFT43Q96FT9 208 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 OSBPL8Q9BZF1 889 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 GINM1Q9NU53 330 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 NARFQ9UHQ1 456 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 PPM1HQ9ULR3 514 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 PFDN1O60925 122 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 LMNAP02545 664 aaKnown RBP15.15■□□□□ 0.02
SDC1-201ENST00000254351 FDX1P10109 184 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 EPHB1P54762 984 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 INHBCP55103 352 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 BMT2Q1RMZ1 405 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 SLFN13Q68D06 897 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 AMIGO3Q86WK7 504 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 GATA6Q92908 595 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 ITFG2Q969R8 447 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 ANKRD27Q96NW4 1050 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 OLFML3Q9NRN5 406 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 PACSIN3Q9UKS6 424 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 CHMP2BQ9UQN3 213 aa15.15■□□□□ 0.02
SDC1-201ENST00000254351 ARHGEF35A5YM69 484 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 C2CD2LO14523 706 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 ARL4CP56559 192 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 AP1B1Q10567 949 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 RIPOR1Q6ZS17 1223 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 RAPH1Q70E73 1250 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 SATL1Q86VE3 508 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 TAS1R2Q8TE23 839 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 OPTNQ96CV9 577 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 VAV3Q9UKW4 847 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 SLC4A7Q9Y6M7 1214 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms