RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 IL17RAQ96F46 866 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 GID8Q9NWU2 228 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 SPAG7O75391 227 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 KCNA3P22001 575 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 SERPINB9P50453 376 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 FKBP1BP68106 108 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 OCRLQ01968 901 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 PPATQ06203 517 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 TTC30AQ86WT1 665 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 PDCD6IPQ8WUM4 868 aaKnown RBP13.38□□□□□ -0.27
USP40-201ENST00000251722 TMEM143Q96AN5 459 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 TRIM55Q9BYV6 548 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 MAF1Q9H063 256 aa13.38□□□□□ -0.27
USP40-201ENST00000251722 EIF3HO15372 352 aaKnown RBP eCLIP13.37□□□□□ -0.278e-6■■□□□ 11.4
USP40-201ENST00000251722 DTNBO60941 627 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 FBXO21O94952 628 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 PDCLQ13371 301 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 RASSF3Q86WH2 238 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 UHMK1Q8TAS1 419 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 DDX28Q9NUL7 540 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 MAGED2Q9UNF1 606 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 GMEB1Q9Y692 573 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 TRIM49BA6NDI0 452 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 SYCE1LA8MT33 242 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 LCP1P13796 627 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 ACTR2P61160 394 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 RPS6P62753 249 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 TBL3Q12788 808 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 ITGB3BPQ13352 177 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 RFWD2Q8NHY2 731 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 ZNF512Q96ME7 567 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 MTG1Q9BT17 334 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 KIFC3Q9BVG8 833 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 C6orf203Q9P0P8 240 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 F9P00740 461 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 KRT14P02533 472 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 SREBF1P36956 1147 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 OXCT1P55809 520 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 ARHGEF7Q14155 803 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 SHC4Q6S5L8 630 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 C15orf52Q6ZUT6 534 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 NLRP9Q7RTR0 991 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 TLK2Q86UE8 772 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 RBBP8NLQ8NC74 664 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 PDZD8Q8NEN9 1154 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 ATL2Q8NHH9 583 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 MRPL9Q9BYD2 267 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 OLA1Q9NTK5 396 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 DEAF1O75398 565 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 KRT16P08779 473 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 KCNA2P16389 499 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 NMT1P30419 496 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 SYT2Q8N9I0 419 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 TMEM131LA2VDJ0 1609 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 MOCS2O96007 188 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 HIST1H2AGP0C0S8 130 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 HIST1H2ADP20671 130 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 SERPINB4P48594 390 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 TUBA1BP68363 451 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 DPYDQ12882 1025 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 TUBA1AQ71U36 451 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 DDX53Q86TM3 631 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 ITIH5Q86UX2 942 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 SLC7A14Q8TBB6 771 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 RMDN1Q96DB5 314 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 HIST1H2AHQ96KK5 128 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 HIST1H2AJQ99878 128 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 H2AFJQ9BTM1 129 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 RSAD1Q9HA92 442 aa13.37□□□□□ -0.27
USP40-201ENST00000251722 EPB41L4AQ9HCS5 686 aaPredicted RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 APOBEC2Q9Y235 224 aaKnown RBP13.37□□□□□ -0.27
USP40-201ENST00000251722 MAGEA13PA6NCF6 341 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 SLC11A2P49281 568 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 CYP4A22Q5TCH4 519 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 SLC7A5P2Q9GIP4 190 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 TRPC7Q9HCX4 862 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 COL5A2P05997 1499 aaPredicted RBP13.36□□□□□ -0.27
USP40-201ENST00000251722 OGTO15294 1046 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 CD2BP2O95400 341 aaKnown RBP13.36□□□□□ -0.27
USP40-201ENST00000251722 CTSHP09668 335 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 TRPC1P48995 793 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 RCN1Q15293 331 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 EFL1Q7Z2Z2 1120 aaKnown RBP13.36□□□□□ -0.27
USP40-201ENST00000251722 ZNF557Q8N988 423 aaPredicted RBP13.36□□□□□ -0.27
USP40-201ENST00000251722 MAD2L2Q9UI95 211 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 BCL9O00512 1426 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 MAP4P27816 1152 aaKnown RBP13.36□□□□□ -0.27
USP40-201ENST00000251722 KPNB1Q14974 876 aaKnown RBP13.36□□□□□ -0.27
USP40-201ENST00000251722 NDUFA5Q16718 116 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 NT5DC4Q86YG4 428 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 TMEM60Q9H2L4 133 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 OR1G1P47890 313 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 STAT4Q14765 748 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 MTFR1Q15390 333 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 SYTL3Q4VX76 610 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 TAF2Q6P1X5 1199 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 STOX1Q6ZVD7 989 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 ZNF518BQ9C0D4 1074 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 SLC4A7Q9Y6M7 1214 aa13.36□□□□□ -0.27
USP40-201ENST00000251722 LSM1O15116 133 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms