RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 COG5Q9UP83 839 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 F5H423 210 aaPredicted RBP13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 CHUKO15111 745 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 PTPRAP18433 802 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 LLGL2Q6P1M3 1020 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 ABRAQ8N0Z2 381 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 KIF12Q96FN5 646 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 NEUROG2Q9H2A3 272 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 TRABDQ9H4I3 376 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 A0A0G2JND7 137 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 SDC4P31431 198 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 BCAR1P56945 870 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 SESN3P58005 492 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 IFRD2Q12894 506 aaPredicted RBP13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 PPM1NQ8N819 430 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 GBP7Q8N8V2 638 aaPredicted RBP13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 EIF1ADQ8N9N8 165 aaKnown RBP13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 CISHQ9NSE2 258 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 DMAC2Q9NW81 257 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 RNF181Q9P0P0 153 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 PDGFRAP16234 1089 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 PDE1BQ01064 536 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 CENPCQ03188 943 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 TAP1Q03518 808 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 ATP11CQ8NB49 1132 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 CGRRF1Q99675 332 aa13.04□□□□□ -0.32
TM9SF4-201ENST00000217315 RIPK2O43353 540 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 TNFAIP2Q03169 654 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 NR1H3Q13133 447 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 SMAD1Q15797 465 aaKnown RBP13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 SPATA21Q7Z572 469 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 UBA3Q8TBC4 463 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 KLF6Q99612 283 aaPredicted RBP13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 SMARCAD1Q9H4L7 1026 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 TPX2Q9ULW0 747 aaKnown RBP13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 EDIL3O43854 480 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 ONECUT3O60422 494 aaPredicted RBP13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 RBP3P10745 1247 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 ARL4AP40617 200 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 LY6KQ17RY6 165 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 PCGF5Q86SE9 256 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 CD302Q8IX05 232 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 PPFIBP2Q8ND30 876 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 ANKRD36CQ5JPF3 1778 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 PLA2G6O60733 806 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 DUPD1Q68J44 220 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 EMC1Q8N766 993 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 TTC16Q8NEE8 873 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 UBXN6Q9BZV1 441 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 CYP39A1Q9NYL5 469 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 WHRNQ9P202 907 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 USP15Q9Y4E8 981 aaPredicted RBP13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 SNX9Q9Y5X1 595 aa13.03□□□□□ -0.32
TM9SF4-201ENST00000217315 MAPK13O15264 365 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 RPS6KA5O75582 802 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 SAT1P21673 171 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 RCN2Q14257 317 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 PSMD6Q15008 389 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 TRIM68Q6AZZ1 485 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 CLEC4DQ8WXI8 215 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 ETNK1Q9HBU6 452 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 LRRC4Q9HBW1 653 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 DDX20Q9UHI6 824 aaKnown RBP13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 NOD1Q9Y239 953 aa13.02□□□□□ -0.32
TM9SF4-201ENST00000217315 IQANK1A0A1B0GTG1 560 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 CCT8L1PA6NM43 557 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 M0QZ92 97 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 PSTPIP1O43586 416 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 MAP3K6O95382 1288 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TTC4O95801 387 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 ITGB3P05106 788 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TMEM62Q0P6H9 643 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TRPM8Q7Z2W7 1104 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TRAPPC12Q8WVT3 735 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 BSNDQ8WZ55 320 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 SERPINB12Q96P63 405 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 LRRC37BQ96QE4 947 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TMEM121Q9BTD3 319 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 ATRNL1Q5VV63 1379 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TCRBV7S2A1N4TA0A589 114 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 DDX3YO15523 660 aaKnown RBP13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 ROR1Q01973 937 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 TMEM132BQ14DG7 1078 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 RASGEF1CQ8N431 466 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 SPATA18Q8TC71 538 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 ASAP3Q8TDY4 903 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 PDGFDQ9GZP0 370 aaPredicted RBP13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 KLC2Q9H0B6 622 aa13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 METTL5Q9NRN9 209 aaKnown RBP13.02□□□□□ -0.33
TM9SF4-201ENST00000217315 FAM47DPA6NHR8 397 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 HNRNPH1P31943 449 aaKnown RBP13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 NCKAP1LP55160 1127 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 NFIL3Q16649 462 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 ACAP3Q96P50 834 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 SH3GL2Q99962 352 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 FAM129AQ9BZQ8 928 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 DHX35Q9H5Z1 703 aaKnown RBP13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 ECT2Q9H8V3 914 aa13.01□□□□□ -0.33
TM9SF4-201ENST00000217315 TXLNGQ9NUQ3 528 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms