RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PADI4Q9UM07 663 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NCKAP5LQ9HCH0 1330 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 UQCRBP14927 111 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TMOD1P28289 359 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 RFX4Q33E94 735 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ARMC4Q5T2S8 1044 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 EMC10Q5UCC4 262 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SMYD5Q6GMV2 418 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PRPF39Q86UA1 669 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 KIF17Q9P2E2 1029 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 GTF3C4Q9UKN8 822 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MAP3K19Q56UN5 1328 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TAF4O00268 1085 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PABPC1P11940 636 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PLCG1P19174 1290 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SLC1A4P43007 532 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 EXOSC10Q01780 885 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 C11orf91Q3C1V1 193 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SLFN12LQ6IEE8 588 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PPIL6Q8IXY8 311 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 KATNAL1Q9BW62 490 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 AMACRQ9UHK6 382 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NEURL1BA8MQ27 555 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SLC22A2O15244 555 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SP100P23497 879 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 DMP1Q13316 513 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CLEC4GQ6UXB4 293 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 GDPD5Q8WTR4 605 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 OSBPL6Q9BZF3 934 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 IPPQ9Y573 584 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ESYT2A0FGR8 921 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PHGDHO43175 533 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ATP2B4P23634 1241 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 DMPKQ09013 629 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TRAP1Q12931 704 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RFX6Q8HWS3 928 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 NAT14Q8WUY8 206 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 OXNAD1Q96HP4 312 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM8Q9BZR9 551 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ADNPQ9H2P0 1102 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 BFARQ9NZS9 450 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PTBP2Q9UKA9 531 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PRPF19Q9UMS4 504 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PCDHGC5Q9Y5F6 944 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ADCY10Q96PN6 1610 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CENPXA8MT69 81 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 AXIN1O15169 862 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RGS20O76081 388 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 MAGEA4P43358 317 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SLC29A2Q14542 456 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 G2E3Q7L622 706 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TAS2R42Q7RTR8 314 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 VCPIP1Q96JH7 1222 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.88□□□□□ -1.633e-7■■■□□ 19
SCN1A-220ENST00000641603 SLC12A4Q9UP95 1085 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 GNB5O14775 395 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TEX33O43247 280 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 GLRA3O75311 464 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 LARGE1O95461 756 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 STAT5AP42229 794 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 FXR1P51114 621 aaKnown RBP eCLIP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 STAT5BP51692 787 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ACAP2Q15057 778 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 EAPPQ56P03 285 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TOM1L2Q6ZVM7 507 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF572Q7Z3I7 529 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 UNC45BQ8IWX7 931 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RTL3Q8N8U3 475 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 HM13Q8TCT9 377 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RAD54LQ92698 747 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM62Q9BVG3 475 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 YTHDF1Q9BYJ9 559 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CDYLQ9Y232 598 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SLC18A1P54219 525 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PMS1P54277 932 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SAMD4BQ5PRF9 694 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ARCQ7LC44 396 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC117Q8IWD4 279 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC17Q96LX7 622 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PSTPIP2Q9H939 334 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SLC8A2Q9UPR5 921 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 FRMPD4Q14CM0 1322 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 CD19P15391 556 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 HOXB8P17481 243 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 STIP1P31948 543 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 KDSRQ06136 332 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 SUZ12Q15022 739 aaKnown RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 C15orf59Q2T9L4 293 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 HAUS6Q7Z4H7 955 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 LRRC49Q8IUZ0 686 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 TINF2Q9BSI4 451 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 RAPGEFL1Q9UHV5 662 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 BTBD3Q9Y2F9 522 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 NFIBO00712 420 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 GAS7O60861 476 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ROR1Q01973 937 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 IFRD2Q12894 506 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 PDK3Q15120 406 aa4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ZC2HC1CQ53FD0 456 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF618Q5T7W0 954 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms