RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	ANKS3	Q6ZW76	656 aa		28.84	■■■□□ 2.21
VEGFA-231	ENST00000640499	CACTIN	Q8WUQ7	758 aa	Known RBP	28.84	■■■□□ 2.21
VEGFA-231	ENST00000640499	CCDC127	Q96BQ5	260 aa		28.84	■■■□□ 2.21
VEGFA-231	ENST00000640499	MTCL1	Q9Y4B5	1905 aa	Known RBP	28.84	■■■□□ 2.21
VEGFA-231	ENST00000640499	CALU	O43852	315 aa	Predicted RBP	28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	KIF20A	O95235	890 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	POLR2B	P30876	1174 aa	Known RBP	28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	OR1D2	P34982	312 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	PMS1	P54277	932 aa	Known RBP	28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	CREM	Q03060	361 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	RAB33A	Q14088	237 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	SURF1	Q15526	300 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	WDR49	Q8IV35	697 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	ADSSL1	Q8N142	457 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	SUSD6	Q92537	303 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	SENP8	Q96LD8	212 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	NECAB3	Q96P71	396 aa	Predicted RBP	28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	AGAP1	Q9UPQ3	857 aa		28.83	■■■□□ 2.21
VEGFA-231	ENST00000640499	GLUD1	P00367	558 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	C1R	P00736	705 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	HOXB8	P17481	243 aa	Predicted RBP	28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	MORC3	Q14149	939 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	CAMK4	Q16566	473 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	PUS10	Q3MIT2	529 aa	Known RBP	28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	CENPP	Q6IPU0	288 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	PDXDC1	Q6P996	788 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	CSGALNACT2	Q8N6G5	542 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	CGRRF1	Q99675	332 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	MAN1C1	Q9NR34	630 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	FBXL5	Q9UKA1	691 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	USP15	Q9Y4E8	981 aa	Predicted RBP	28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	CDY1	Q9Y6F8	540 aa		28.82	■■■□□ 2.2
VEGFA-231	ENST00000640499	OAZ2	O95190	189 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	SRGAP2B	P0DMP2	458 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	DLAT	P10515	647 aa	Known RBP	28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	TAF6	P49848	677 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	CLDN10	P78369	228 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	SMAD2	Q15796	467 aa	Known RBP	28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	DUOXA2	Q1HG44	320 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	C1orf220	Q5T0J3	134 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	SLC8B1	Q6J4K2	584 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	DSTYK	Q6XUX3	929 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	PARD3B	Q8TEW8	1205 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	ITGA11	Q9UKX5	1188 aa		28.81	■■■□□ 2.2
VEGFA-231	ENST00000640499	TSC2	P49815	1807 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	AKAP3	O75969	853 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	CST3	P01034	146 aa	Predicted RBP	28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	TMEM191B	P0C7N4	346 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	NR2F2	P24468	414 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	DLG4	P78352	724 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	ANKRD40	Q6AI12	368 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	TRAPPC11	Q7Z392	1133 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	APPL2	Q8NEU8	664 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	ADAMTS19	Q8TE59	1207 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	COL25A1	Q9BXS0	654 aa	Predicted RBP	28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	ADAM7	Q9H2U9	754 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	DZANK1	Q9NVP4	752 aa		28.8	■■■□□ 2.2
VEGFA-231	ENST00000640499	LRRIQ3	A6PVS8	624 aa	Predicted RBP	28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	KPNA7	A9QM74	516 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	PPP1R3G	B7ZBB8	358 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	BIN1	O00499	593 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	PAPLN	O95428	1278 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	WEE2	P0C1S8	567 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	TYMP	P19971	482 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	PAX3	P23760	479 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	RARS2	Q5T160	578 aa	Known RBP	28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	CEP135	Q66GS9	1140 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	EEF2KMT	Q96G04	330 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	ANKRD36BP1	Q96IX9	119 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	KIAA1468	Q9P260	1216 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	FBXW11	Q9UKB1	542 aa		28.79	■■■□□ 2.2
VEGFA-231	ENST00000640499	CYP11A1	P05108	521 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	TNNI1	P19237	187 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	RBP5	P82980	135 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	ADAM9	Q13443	819 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	EDRF1	Q3B7T1	1238 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	CTXN3	Q4LDR2	81 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	ZC3H3	Q8IXZ2	948 aa	Known RBP	28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	LRRC52	Q8N7C0	313 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	KREMEN2	Q8NCW0	462 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	GBP4	Q96PP9	640 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	FNBP1	Q96RU3	617 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	RTP3	Q9BQQ7	232 aa		28.78	■■■□□ 2.2
VEGFA-231	ENST00000640499	WDR27	A2RRH5	827 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	TRIM49B	A6NDI0	452 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499		H7C4K7	107 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	CYB561D2	O14569	222 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	RFPL2	O75678	378 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	ABLIM3	O94929	683 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	TNNC2	P02585	160 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	KRT19	P08727	400 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	MCCD1	P59942	119 aa	Predicted RBP	28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	ROR1	Q01973	937 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	YWHAH	Q04917	246 aa	Predicted RBP	28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	TMC5	Q6UXY8	1006 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	GPT2	Q8TD30	523 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	HDAC7	Q8WUI4	952 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	CLSTN2	Q9H4D0	955 aa		28.77	■■■□□ 2.2
VEGFA-231	ENST00000640499	MAPK13	O15264	365 aa		28.76	■■■□□ 2.19
VEGFA-231	ENST00000640499	C4BPA	P04003	597 aa	Known RBP	28.76	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms