RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 LRRC3BQ96PB8 259 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 PPP1R10Q96QC0 940 aaKnown RBP17.95■□□□□ 0.46
CLN3-264ENST00000637985 FZD8Q9H461 694 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 BRMS1Q9HCU9 246 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 ASAH2Q9NR71 780 aa17.95■□□□□ 0.46
CLN3-264ENST00000637985 ASH1LQ9NR48 2969 aaKnown RBP17.95■□□□□ 0.46
CLN3-264ENST00000637985 ADAMTS20P59510 1910 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 BCLAF3A2AJT9 711 aaKnown RBP17.94■□□□□ 0.46
CLN3-264ENST00000637985 N4BP3O15049 544 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 CCNT1O60563 726 aaKnown RBP17.94■□□□□ 0.46
CLN3-264ENST00000637985 SLITRK3O94933 977 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 LARGE1O95461 756 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 SEC24BO95487 1268 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 CAVIN2O95810 425 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 PRKCBP05771 671 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 KRT2P35908 639 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 TWF1Q12792 350 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 MRPL58Q14197 206 aaKnown RBP17.94■□□□□ 0.46
CLN3-264ENST00000637985 SOWAHCQ53LP3 525 aaPredicted RBP17.94■□□□□ 0.46
CLN3-264ENST00000637985 NOSTRINQ8IVI9 506 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 OXER1Q8TDS5 423 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 HAS1Q92839 578 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 KIF12Q96FN5 646 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 SLITRK6Q9H5Y7 841 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 GJB4Q9NTQ9 266 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 IGSF10Q6WRI0 2623 aa17.94■□□□□ 0.46
CLN3-264ENST00000637985 TRIP11Q15643 1979 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 CREB5Q02930 508 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 ARHGAP29Q52LW3 1261 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 GLRA4Q5JXX5 417 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 CDCA2Q69YH5 1023 aaPredicted RBP17.93■□□□□ 0.46
CLN3-264ENST00000637985 ARID3BQ8IVW6 561 aaPredicted RBP17.93■□□□□ 0.46
CLN3-264ENST00000637985 TPH2Q8IWU9 490 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 CAMKK1Q8N5S9 505 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 NSUN7Q8NE18 718 aaKnown RBP17.93■□□□□ 0.46
CLN3-264ENST00000637985 ZFYVE19Q96K21 471 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 LRRC3Q9BY71 257 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 POLR3FQ9H1D9 316 aaPredicted RBP17.93■□□□□ 0.46
CLN3-264ENST00000637985 FBXL5Q9UKA1 691 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 MAFFQ9ULX9 164 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 SLC8A2Q9UPR5 921 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 MSRB2Q9Y3D2 182 aa17.93■□□□□ 0.46
CLN3-264ENST00000637985 ATG2BQ96BY7 2078 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 PCNX2A6NKB5 2137 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 CDX4O14627 284 aaPredicted RBP17.92■□□□□ 0.46
CLN3-264ENST00000637985 ATG13O75143 517 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 RHOBTB1O94844 696 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 LYPLA2O95372 231 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 ELF2Q15723 593 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 NCAPH2Q6IBW4 605 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 SLFN12Q8IYM2 578 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 GOLGA2P5Q9HBQ8 144 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 TMEM9BQ9NQ34 198 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 ANKEF1Q9NU02 776 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 AFF4Q9UHB7 1163 aaKnown RBP17.92■□□□□ 0.46
CLN3-264ENST00000637985 GDAQ9Y2T3 454 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 NUP205Q92621 2012 aa17.92■□□□□ 0.46
CLN3-264ENST00000637985 ASCC3Q8N3C0 2202 aaKnown RBP17.92■□□□□ 0.46
CLN3-264ENST00000637985 HELZ2Q9BYK8 2649 aaKnown RBP17.92■□□□□ 0.46
CLN3-264ENST00000637985 KIF26AQ9ULI4 1882 aaPredicted RBP17.91■□□□□ 0.46
CLN3-264ENST00000637985 LRRIQ4A6NIV6 560 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 H7C4K7 107 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 SYN3O14994 580 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 HYAL3O43820 417 aaPredicted RBP17.91■□□□□ 0.46
CLN3-264ENST00000637985 MARCH6O60337 910 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 DTNBO60941 627 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 BAG4O95429 457 aaKnown RBP17.91■□□□□ 0.46
CLN3-264ENST00000637985 EARS2Q5JPH6 523 aaKnown RBP17.91■□□□□ 0.46
CLN3-264ENST00000637985 KIAA1211LQ6NV74 962 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 HAUS6Q7Z4H7 955 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 GPIHBP1Q8IV16 184 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 TNFRSF25Q93038 417 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 TMEM209Q96SK2 561 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 HSD17B14Q9BPX1 270 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 ADPGKQ9BRR6 497 aa17.91■□□□□ 0.46
CLN3-264ENST00000637985 A0A1W2PRU2 124 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 CAPNS1P04632 268 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 RARRES1P49788 294 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 SOX4Q06945 474 aaPredicted RBP17.9■□□□□ 0.46
CLN3-264ENST00000637985 TNK2Q07912 1038 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 NR5A1Q13285 461 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 PRPF4BQ13523 1007 aaKnown RBP17.9■□□□□ 0.46
CLN3-264ENST00000637985 TRIM29Q14134 588 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 TMEM196Q5HYL7 178 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 TMC8Q8IU68 726 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 MKNK1Q9BUB5 465 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 GPRC5CQ9NQ84 441 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 OBP2AQ9NY56 170 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 KLK13Q9UKR3 277 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 LIMCH1Q9UPQ0 1083 aa17.9■□□□□ 0.46
CLN3-264ENST00000637985 ABCA7Q8IZY2 2146 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 KHNYNO15037 678 aaKnown RBP17.89■□□□□ 0.45
CLN3-264ENST00000637985 DCLK1O15075 740 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 JAK2O60674 1132 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 CACNB1Q02641 598 aaPredicted RBP17.89■□□□□ 0.45
CLN3-264ENST00000637985 ITPRIPL2Q3MIP1 535 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 CTXN3Q4LDR2 81 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 STXBP5Q5T5C0 1151 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 EEF1DP3Q658K8 133 aa17.89■□□□□ 0.45
CLN3-264ENST00000637985 FSTL4Q6MZW2 842 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms