RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF280DQ6N043 979 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 STXBP4Q6ZWJ1 553 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 TCEAL8Q8IYN2 117 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 MYADMQ96S97 322 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 CBWD1Q9BRT8 395 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 FAM213AQ9BRX8 229 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 OXCT2Q9BYC2 517 aaPredicted RBP20.85■□□□□ 0.93
CLN3-260ENST00000637578 MAFFQ9ULX9 164 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 A0A1B0GVL5 298 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 SPTLC1O15269 473 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 PFKFB1P16118 471 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 TYMPP19971 482 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 CLEC17AQ6ZS10 378 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 UNC13DQ70J99 1090 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 GRASPQ7Z6J2 395 aaPredicted RBP20.84■□□□□ 0.93
CLN3-260ENST00000637578 BRSK2Q8IWQ3 736 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 EFCAB13Q8IY85 973 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 ZNF507Q8TCN5 953 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 SAAL1Q96ER3 474 aa20.84■□□□□ 0.93
CLN3-260ENST00000637578 ANK1P16157 1881 aa20.83■□□□□ 0.93
CLN3-260ENST00000637578 PVALEFA0A1B0GWK0 134 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 KIAA0391O15091 583 aaKnown RBP20.83■□□□□ 0.92
CLN3-260ENST00000637578 CCL16O15467 120 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 EXTL3O43909 919 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 XYLBO75191 536 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 SLFN14P0C7P3 912 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 WNT7BP56706 349 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 YWHAHQ04917 246 aaPredicted RBP20.83■□□□□ 0.92
CLN3-260ENST00000637578 FSIP1Q8NA03 581 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 GOLPH3LQ9H4A5 285 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 KCNK12Q9HB15 430 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 DPP3Q9NY33 737 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 IGSF9Q9P2J2 1179 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 HPSEQ9Y251 543 aa20.83■□□□□ 0.92
CLN3-260ENST00000637578 GOLGA6L4A6NEF3 574 aa20.82■□□□□ 0.92
CLN3-260ENST00000637578 ACTN4O43707 911 aaKnown RBP20.82■□□□□ 0.92
CLN3-260ENST00000637578 CASP1P29466 404 aa20.82■□□□□ 0.92
CLN3-260ENST00000637578 GBP2P32456 591 aaPredicted RBP20.82■□□□□ 0.92
CLN3-260ENST00000637578 FAM26FQ5R3K3 315 aa20.82■□□□□ 0.92
CLN3-260ENST00000637578 SENP8Q96LD8 212 aa20.82■□□□□ 0.92
CLN3-260ENST00000637578 MFSD14AQ96MC6 490 aa20.82■□□□□ 0.92
CLN3-260ENST00000637578 TIMM13Q9Y5L4 95 aaPredicted RBP20.82■□□□□ 0.92
CLN3-260ENST00000637578 ZFP37Q9Y6Q3 630 aaPredicted RBP20.82■□□□□ 0.92
CLN3-260ENST00000637578 FAM237AA0A1B0GTK4 181 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 SEC24AO95486 1093 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 CYP11A1P05108 521 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 LAMP2P13473 410 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 DSTYKQ6XUX3 929 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 PBXIP1Q96AQ6 731 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 BORCS6Q96GS4 357 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 BLZF1Q9H2G9 400 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 SMOC2Q9H3U7 446 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 DNMT3BQ9UBC3 853 aaKnown RBP20.81■□□□□ 0.92
CLN3-260ENST00000637578 AFF4Q9UHB7 1163 aaKnown RBP20.81■□□□□ 0.92
CLN3-260ENST00000637578 SERTAD1Q9UHV2 236 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 HCN4Q9Y3Q4 1203 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 DOCK8Q8NF50 2099 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 DOCK6Q96HP0 2047 aa20.81■□□□□ 0.92
CLN3-260ENST00000637578 FSHRP23945 695 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 NDUFA8P51970 172 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 ARPP19P56211 112 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 NTHL1P78549 312 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 TDGQ13569 410 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 CUL4BQ13620 913 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 ARMCX5Q6P1M9 558 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 GPD1LQ8N335 351 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 CXorf38Q8TB03 319 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 SCFD1Q8WVM8 642 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 NXPE3Q969Y0 559 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 PCIF1Q9H4Z3 704 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 AVENQ9NQS1 362 aaPredicted RBP20.8■□□□□ 0.92
CLN3-260ENST00000637578 RBAKQ9NYW8 714 aaPredicted RBP20.8■□□□□ 0.92
CLN3-260ENST00000637578 UBE4BO95155 1302 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 GOLGA8IPA6NC78 632 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 OR6C75A6NL08 312 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 GOLGA8JA6NMD2 632 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 ANHXE9PGG2 379 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 TGFB1I1O43294 461 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 GADD45BO75293 160 aaPredicted RBP20.8■□□□□ 0.92
CLN3-260ENST00000637578 ELF1P32519 619 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 AFMP43652 599 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 BMT2Q1RMZ1 405 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 OVOS1Q6IE37 1185 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 USP37Q86T82 979 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 CEP57L1Q8IYX8 460 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 PAGE5Q96GU1 130 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 CYP4F11Q9HBI6 524 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 HCFC1R1Q9NWW0 138 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 USP25Q9UHP3 1055 aa20.8■□□□□ 0.92
CLN3-260ENST00000637578 PRRG1O14668 218 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 KLRC4O43908 158 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 VNN2O95498 520 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 ODC1P11926 461 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 SNRPFP62306 86 aaKnown RBP20.79■□□□□ 0.92
CLN3-260ENST00000637578 MYBPC2Q14324 1141 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 RNF19BQ6ZMZ0 732 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 GET4Q7L5D6 327 aaPredicted RBP20.79■□□□□ 0.92
CLN3-260ENST00000637578 GRAMD1CQ8IYS0 662 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 CDH7Q9ULB5 785 aa20.79■□□□□ 0.92
CLN3-260ENST00000637578 POLIQ9UNA4 740 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms