RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RGS18Q9NS28 235 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 NXF1Q9UBU9 619 aaKnown RBP19.74■□□□□ 0.75
CLN3-254ENST00000637050 POLIQ9UNA4 740 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 PCDHB4Q9Y5E5 795 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 DCDC2CA8MYV0 355 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 PJA2O43164 708 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 NBNO60934 754 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 TUBB4AP04350 444 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 TNNT1P13805 278 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 TNFAIP3P21580 790 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 PDE6CP51160 858 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 ZNF132P52740 706 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 FAAP100Q0VG06 881 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 C9orf57Q5W0N0 161 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 ALKBH5Q6P6C2 394 aaKnown RBP19.73■□□□□ 0.75
CLN3-254ENST00000637050 TMEM270Q6UE05 265 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 RTN4RL1Q86UN2 441 aaPredicted RBP19.73■□□□□ 0.75
CLN3-254ENST00000637050 DDX1Q92499 740 aaKnown RBP19.73■□□□□ 0.75
CLN3-254ENST00000637050 LPPQ93052 612 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 CISHQ9NSE2 258 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 TFR2Q9UP52 801 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 ATP8B3O60423 1300 aa19.73■□□□□ 0.75
CLN3-254ENST00000637050 PIRO00625 290 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 P4HA1P13674 534 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 CHRNB2P17787 502 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 MLH1P40692 756 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 YWHAEP62258 255 aaKnown RBP19.72■□□□□ 0.75
CLN3-254ENST00000637050 TLE2Q04725 743 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 SOX4Q06945 474 aaPredicted RBP19.72■□□□□ 0.75
CLN3-254ENST00000637050 MYO1EQ12965 1108 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 TRIM60Q495X7 471 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 GLIPR1L2Q4G1C9 344 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 CCDC122Q5T0U0 273 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 FAM43BQ6ZT52 329 aaPredicted RBP19.72■□□□□ 0.75
CLN3-254ENST00000637050 ZNF598Q86UK7 904 aaKnown RBP19.72■□□□□ 0.75
CLN3-254ENST00000637050 ECHDC2Q86YB7 292 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 TXLNBQ8N3L3 684 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 RBBP8NLQ8NC74 664 aaPredicted RBP19.72■□□□□ 0.75
CLN3-254ENST00000637050 PGBD4Q96DM1 585 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 GAD1Q99259 594 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 CYP3A43Q9HB55 503 aa19.72■□□□□ 0.75
CLN3-254ENST00000637050 ARL5CA6NH57 179 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 C9IYK1 514 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 PPEF2O14830 753 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 KRT86O43790 486 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 WEE2P0C1S8 567 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 ETF1P62495 437 aaKnown RBP19.71■□□□□ 0.75
CLN3-254ENST00000637050 CDR2Q01850 454 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 KIF5AQ12840 1032 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 PLEKHG4Q58EX7 1191 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 SCARA5Q6ZMJ2 495 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 RPUSD2Q8IZ73 545 aaKnown RBP19.71■□□□□ 0.75
CLN3-254ENST00000637050 LINC01599Q8WXQ3 324 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 FTHL17Q9BXU8 183 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 TSGA10Q9BZW7 698 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 SDCBP2Q9H190 292 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 FAM124BQ9H5Z6 455 aaPredicted RBP19.71■□□□□ 0.75
CLN3-254ENST00000637050 UBN1Q9NPG3 1134 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 SLC38A7Q9NVC3 462 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 TRIM10Q9UDY6 481 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 CAPN2P17655 700 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 LRPAP1P30533 357 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 FAM189BP81408 668 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 FMO1Q01740 532 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 DNTTIP2Q5QJE6 756 aaKnown RBP19.71■□□□□ 0.75
CLN3-254ENST00000637050 SLC24A5Q71RS6 500 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 ZNF677Q86XU0 584 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 RPS6KC1Q96S38 1066 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 TSPYL2Q9H2G4 693 aaPredicted RBP19.71■□□□□ 0.75
CLN3-254ENST00000637050 HIPK3Q9H422 1215 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 RSAD1Q9HA92 442 aa19.71■□□□□ 0.75
CLN3-254ENST00000637050 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.71■□□□□ 0.75
CLN3-254ENST00000637050 THP07101 528 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 MMEP08473 750 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 CD58P19256 250 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 TAF3Q5VWG9 929 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 PALB2Q86YC2 1186 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 PCDHB18PQ96TA0 734 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 IRX2Q9BZI1 471 aaPredicted RBP19.7■□□□□ 0.74
CLN3-254ENST00000637050 SMYD3Q9H7B4 428 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 MIOSQ9NXC5 875 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 TANC1Q9C0D5 1861 aa19.7■□□□□ 0.74
CLN3-254ENST00000637050 INPPL1O15357 1258 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 PARNO95453 639 aaKnown RBP19.69■□□□□ 0.74
CLN3-254ENST00000637050 EOMESO95936 686 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 PNPLA4P41247 253 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 RAP1GAPP47736 663 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 AFF1P51825 1210 aaKnown RBP19.69■□□□□ 0.74
CLN3-254ENST00000637050 CDH8P55286 799 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 TNNC1P63316 161 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 ZNF560Q96MR9 790 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 PACSIN1Q9BY11 444 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 C11orf49Q9H6J7 331 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 GOLGA2P5Q9HBQ8 144 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 SEPT11Q9NVA2 429 aaKnown RBP19.69■□□□□ 0.74
CLN3-254ENST00000637050 INTUQ9ULD6 942 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 GUCA1BQ9UMX6 200 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 DUSP10Q9Y6W6 482 aa19.69■□□□□ 0.74
CLN3-254ENST00000637050 KIF5CO60282 957 aa19.68■□□□□ 0.74
CLN3-254ENST00000637050 CALCAP01258 141 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms