RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PPFIA1Q13136 1202 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 LLGL1Q15334 1064 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 PRAMEF19Q5SWL8 479 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 SEL1L2Q5TEA6 688 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 TRIM72Q6ZMU5 477 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ZDHHC14Q8IZN3 488 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 PPP1R13LQ8WUF5 828 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 TRIM11Q96F44 468 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 TRIM51Q9BSJ1 452 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 XYLT2Q9H1B5 865 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ABHD16BQ9H3Z7 469 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 ADAM22Q9P0K1 906 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 NXF1Q9UBU9 619 aaKnown RBP16.68■□□□□ 0.26
CLN3-251ENST00000636853 DOCK3Q8IZD9 2030 aa16.68■□□□□ 0.26
CLN3-251ENST00000636853 TCRBV7S2A1N4TA0A589 114 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 BHMG1C9JSJ3 638 aaPredicted RBP16.67■□□□□ 0.26
CLN3-251ENST00000636853 MEFVO15553 781 aaPredicted RBP16.67■□□□□ 0.26
CLN3-251ENST00000636853 NFICP08651 508 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 STAG3L1P0CL83 205 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 BRD2P25440 801 aaKnown RBP16.67■□□□□ 0.26
CLN3-251ENST00000636853 GRIK4Q16099 956 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 FAM187BQ17R55 369 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 MARCH8Q5T0T0 291 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 DAB2IPQ5VWQ8 1189 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 MMS22LQ6ZRQ5 1243 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 NLRP7Q8WX94 980 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 NEUROG2Q9H2A3 272 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 DPH5Q9H2P9 285 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 PDZD7Q9H5P4 517 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 CWC15Q9P013 229 aaKnown RBP16.67■□□□□ 0.26
CLN3-251ENST00000636853 POLIQ9UNA4 740 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 ZSWIM8A7E2V4 1837 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 COL1A2P08123 1366 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 LACTBL1A8MY62 500 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 ARF4P18085 180 aaPredicted RBP16.67■□□□□ 0.26
CLN3-251ENST00000636853 POU5F1BQ06416 359 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 CUL1Q13616 776 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 CST9Q5W186 159 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 SCLT1Q96NL6 688 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 TRIM31Q9BZY9 425 aa16.67■□□□□ 0.26
CLN3-251ENST00000636853 FEZ2Q9UHY8 353 aaPredicted RBP16.67■□□□□ 0.26
CLN3-251ENST00000636853 MYO1FO00160 1098 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 GJB6O95452 261 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 ASPAP45381 313 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 RWDD2BP57060 319 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 PHF13Q86YI8 300 aaPredicted RBP16.66■□□□□ 0.26
CLN3-251ENST00000636853 IFNLR1Q8IU57 520 aaPredicted RBP16.66■□□□□ 0.26
CLN3-251ENST00000636853 PRELID2Q8N945 189 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 WHAMMQ8TF30 809 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 C18orf8Q96DM3 657 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 SIX4Q9UIU6 781 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 ZEB2O60315 1214 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 HSF2BPO75031 334 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 IL18RAPO95256 599 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 RAP1GAPP47736 663 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 DR1Q01658 176 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 PTP4A2Q12974 167 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 CLUL1Q15846 466 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 DGKDQ16760 1214 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 LIN9Q5TKA1 542 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 JADE1Q6IE81 842 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 ZIM3Q96PE6 472 aa16.66■□□□□ 0.26
CLN3-251ENST00000636853 UTP11Q9Y3A2 253 aaKnown RBP16.66■□□□□ 0.26
CLN3-251ENST00000636853 MCF2P10911 925 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 FGFR4P22455 802 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 MAMLD1Q13495 774 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 IQSEC1Q6DN90 963 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 SLC13A5Q86YT5 568 aaPredicted RBP16.65■□□□□ 0.26
CLN3-251ENST00000636853 C1orf127Q8N9H9 656 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 MAGOHBQ96A72 148 aaKnown RBP16.65■□□□□ 0.26
CLN3-251ENST00000636853 FAM204AQ9H8W3 233 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 SETD4Q9NVD3 440 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 SLC15A5A6NIM6 579 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 DYNC1LI2O43237 492 aaPredicted RBP16.65■□□□□ 0.26
CLN3-251ENST00000636853 PHF2O75151 1096 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 HUNKP57058 714 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 TNFAIP2Q03169 654 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 TMEM62Q0P6H9 643 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 ALS2CLQ60I27 953 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 KIAA0319LQ8IZA0 1049 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 EIF1ADQ8N9N8 165 aaKnown RBP16.65■□□□□ 0.26
CLN3-251ENST00000636853 IPO4Q8TEX9 1081 aaKnown RBP16.65■□□□□ 0.26
CLN3-251ENST00000636853 TFAP2BQ92481 460 aa16.65■□□□□ 0.26
CLN3-251ENST00000636853 TSPAN1O60635 241 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 ITGB3P05106 788 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 HOXD8P13378 290 aaPredicted RBP16.64■□□□□ 0.25
CLN3-251ENST00000636853 FLT3P36888 993 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 CDH8P55286 799 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 PPP2R5EQ16537 467 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 SLC10A6Q3KNW5 377 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 WDR72Q3MJ13 1102 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 TTC27Q6P3X3 843 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 C1orf131Q8NDD1 294 aaKnown RBP16.64■□□□□ 0.25
CLN3-251ENST00000636853 PIK3R5Q8WYR1 880 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 LENG1Q96BZ8 264 aaPredicted RBP16.64■□□□□ 0.25
CLN3-251ENST00000636853 VCPIP1Q96JH7 1222 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 GINS2Q9Y248 185 aa16.64■□□□□ 0.25
CLN3-251ENST00000636853 PROSCO94903 275 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 ERLIN2O94905 339 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 RARAP10276 462 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms