RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 GPT2Q8TD30 523 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 C18orf25Q96B23 403 aaPredicted RBP19.62■□□□□ 0.73
CLN3-243ENST00000635973 UROC1Q96N76 676 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 KCTD10Q9H3F6 313 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 GOLGA2P5Q9HBQ8 144 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 TUBGCP4Q9UGJ1 667 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 UBQLN1Q9UMX0 589 aaKnown RBP19.62■□□□□ 0.73
CLN3-243ENST00000635973 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.62■□□□□ 0.73
CLN3-243ENST00000635973 TRIP11Q15643 1979 aa19.62■□□□□ 0.73
CLN3-243ENST00000635973 KMT2EQ8IZD2 1858 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 ZNF233A6NK53 670 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 EFEMP2O95967 443 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 NFICP08651 508 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 SPATA31D3P0C874 917 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 MCM4P33991 863 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 PRCPP42785 496 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 NAB2Q15742 525 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 JADE1Q6IE81 842 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 SPATA31D4Q6ZUB0 917 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 CEP57Q86XR8 500 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 CBWD2Q8IUF1 395 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 GPR65Q8IYL9 337 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 RDH13Q8NBN7 331 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 CMASQ8NFW8 434 aaPredicted RBP19.61■□□□□ 0.73
CLN3-243ENST00000635973 HASPINQ8TF76 798 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 HDAC7Q8WUI4 952 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 TSPAN18Q96SJ8 248 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 TSG101Q99816 390 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 PLEKHA4Q9H4M7 779 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 ASB7Q9H672 318 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 KIAA1468Q9P260 1216 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 FNIP2Q9P278 1114 aa19.61■□□□□ 0.73
CLN3-243ENST00000635973 PODXLO00592 558 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 PSMA7O14818 248 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 NR3C1P04150 777 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 GBP2P32456 591 aaPredicted RBP19.6■□□□□ 0.73
CLN3-243ENST00000635973 PPP1R2P41236 205 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 CLCNKBP51801 687 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 PTPN5P54829 565 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 SOX4Q06945 474 aaPredicted RBP19.6■□□□□ 0.73
CLN3-243ENST00000635973 ELAVL2Q12926 359 aaKnown RBP19.6■□□□□ 0.73
CLN3-243ENST00000635973 SNRNP35Q16560 246 aaKnown RBP19.6■□□□□ 0.73
CLN3-243ENST00000635973 FAM171A1Q5VUB5 890 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 BEST2Q8NFU1 509 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 SMG7Q92540 1137 aaKnown RBP19.6■□□□□ 0.73
CLN3-243ENST00000635973 DDX27Q96GQ7 796 aaKnown RBP19.6■□□□□ 0.73
CLN3-243ENST00000635973 PAAF1Q9BRP4 392 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 MFSD1Q9H3U5 465 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 DERAQ9Y315 318 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 C2CD2Q9Y426 696 aa19.6■□□□□ 0.73
CLN3-243ENST00000635973 TGM5O43548 720 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 B3GAT3O94766 335 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 KIF4AO95239 1232 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 C1RP00736 705 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 ADRB2P07550 413 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 RPL17P18621 184 aaKnown RBP19.59■□□□□ 0.73
CLN3-243ENST00000635973 MORC3Q14149 939 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 SURF1Q15526 300 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 COBLL1Q53SF7 1204 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 IER5LQ5T953 404 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 CEP135Q66GS9 1140 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 PDXDC1Q6P996 788 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 TRIML1Q8N9V2 468 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 TTPALQ9BTX7 342 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 TRAF3IP3Q9Y228 551 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 WDFY4Q6ZS81 3184 aa19.59■□□□□ 0.73
CLN3-243ENST00000635973 PDCD11Q14690 1871 aaKnown RBP19.58■□□□□ 0.73
CLN3-243ENST00000635973 RFPL2O75678 378 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 CYP3A5P20815 502 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 NR2F2P24468 414 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 RPL13P26373 211 aaKnown RBP19.58■□□□□ 0.72
CLN3-243ENST00000635973 AVPR2P30518 371 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 RPL9P32969 192 aaKnown RBP19.58■□□□□ 0.72
CLN3-243ENST00000635973 TFAMQ00059 246 aaKnown RBP19.58■□□□□ 0.72
CLN3-243ENST00000635973 UPP1Q16831 310 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 KLHL10Q6JEL2 608 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 DCLRE1AQ6PJP8 1040 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 PRSS55Q6UWB4 352 aaPredicted RBP19.58■□□□□ 0.72
CLN3-243ENST00000635973 NT5DC4Q86YG4 428 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 ADSSL1Q8N142 457 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 PRSS33Q8NF86 280 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 FEZF2Q8TBJ5 459 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 FNBP1Q96RU3 617 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 PDE11AQ9HCR9 933 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 WDR6Q9NNW5 1121 aaKnown RBP19.58■□□□□ 0.72
CLN3-243ENST00000635973 ZDHHC7Q9NXF8 308 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 FRMD4BQ9Y2L6 1034 aa19.58■□□□□ 0.72
CLN3-243ENST00000635973 GUCY2FP51841 1108 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 VCPP55072 806 aaKnown RBP19.57■□□□□ 0.72
CLN3-243ENST00000635973 CYP24A1Q07973 514 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 TDGQ13569 410 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 PSMD5Q16401 504 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 RTP2Q5QGT7 225 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 LIN9Q5TKA1 542 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 SLC9A9Q8IVB4 645 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 CACTINQ8WUQ7 758 aaKnown RBP19.57■□□□□ 0.72
CLN3-243ENST00000635973 CCDC127Q96BQ5 260 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 RHOBTB2Q9BYZ6 727 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 IRF2BPLQ9H1B7 796 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 SMOC2Q9H3U7 446 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms