RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SCP2P22307 547 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 FKBP1BP68106 108 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 PLCB3Q01970 1234 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 DHX9Q08211 1270 aaKnown RBP11.25□□□□□ -0.61
VPS11-208ENST00000621676 SREBF2Q12772 1141 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 NAB2Q15742 525 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 SRGAP1Q7Z6B7 1085 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 CCDC25Q86WR0 208 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 ARRDC4Q8NCT1 418 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 GCOM2Q9BZD3 368 aaPredicted RBP11.25□□□□□ -0.61
VPS11-208ENST00000621676 ZMYND15Q9H091 742 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 ABCB6Q9NP58 842 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 LUC7LQ9NQ29 371 aaKnown RBP11.25□□□□□ -0.61
VPS11-208ENST00000621676 TRIOO75962 3097 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 RPS6KA5O75582 802 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 AKR1A1P14550 325 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 LMO2P25791 158 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 NRLP54845 237 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 MARSP56192 900 aaKnown RBP11.25□□□□□ -0.61
VPS11-208ENST00000621676 TTC19Q6DKK2 380 aaPredicted RBP11.25□□□□□ -0.61
VPS11-208ENST00000621676 SHCBP1Q8NEM2 672 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 ZNF296Q8WUU4 475 aaPredicted RBP11.25□□□□□ -0.61
VPS11-208ENST00000621676 ZNF606Q8WXB4 792 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 SCLYQ96I15 445 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 DPEP3Q9H4B8 488 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 TLL2Q9Y6L7 1015 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 PHLPP2Q6ZVD8 1323 aa11.25□□□□□ -0.61
VPS11-208ENST00000621676 RLFQ13129 1914 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 MEFVO15553 781 aaPredicted RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 TOMM70O94826 608 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 EFNA5P52803 228 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SMC1AQ14683 1233 aaKnown RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 TMEM132DQ14C87 1099 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SH3PXD2AQ5TCZ1 1133 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 TMCO3Q6UWJ1 677 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 MFSD14AQ96MC6 490 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 MCEEQ96PE7 176 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 RHOBTB2Q9BYZ6 727 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 CNTNAP2Q9UHC6 1331 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 KRIT1O00522 736 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 N4BP1O75113 896 aaKnown RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 MUTP22033 750 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 GARTP22102 1010 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SNX17Q15036 470 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 PTGISQ16647 500 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 LONRF2Q1L5Z9 754 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 MORN1Q5T089 497 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SCUBE3Q8IX30 993 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 ZNF564Q8TBZ8 553 aaPredicted RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 ALG3Q92685 438 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 PIWIL1Q96J94 861 aaKnown RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 APBA2Q99767 749 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 ZSWIM1Q9BR11 485 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 TRIM51Q9BSJ1 452 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SDCBP2Q9H190 292 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 DPP3Q9NY33 737 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 MAGED2Q9UNF1 606 aaPredicted RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 ST3GAL5Q9UNP4 418 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 GNEQ9Y223 722 aaKnown RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 NR2E3Q9Y5X4 410 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 M0QYV0 167 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 HOXC6P09630 235 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 HOXA11P31270 313 aaPredicted RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 SCNN1GP51170 649 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 JAM2P57087 298 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 FIGNQ5HY92 759 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 TPCN2Q8NHX9 752 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 ADAM32Q8TC27 787 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 GPR152Q8TDT2 470 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 FAM149B1Q96BN6 582 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 BEGAINQ9BUH8 593 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SENP6Q9GZR1 1112 aaPredicted RBP11.24□□□□□ -0.61
VPS11-208ENST00000621676 RNF208Q9H0X6 261 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 EPB41L5Q9HCM4 733 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SIX4Q9UIU6 781 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 SNX12Q9UMY4 172 aa11.24□□□□□ -0.61
VPS11-208ENST00000621676 ZNFX1Q9P2E3 1918 aaKnown RBP11.23□□□□□ -0.61
VPS11-208ENST00000621676 PASKQ96RG2 1323 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 M0QZ92 97 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 LCP1P13796 627 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 CCDC130P13994 396 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 TNNC1P63316 161 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 PSMD6Q15008 389 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 TXNRD3NBQ6F5E7 133 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 DENND1BQ6P3S1 775 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 SPATA4Q8NEY3 305 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 MRPL45Q9BRJ2 306 aaKnown RBP11.23□□□□□ -0.61
VPS11-208ENST00000621676 CCDC94Q9BW85 323 aaPredicted RBP11.23□□□□□ -0.61
VPS11-208ENST00000621676 C17orf75Q9HAS0 396 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 GPATCH2LQ9NWQ4 482 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 JRKLQ9Y4A0 524 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 SSU72P8A0A1W2PR75 194 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 A8MXQ7 604 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 F8VP50 259 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 LGR5O75473 907 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 GATMP50440 423 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 NDST1P52848 882 aa11.23□□□□□ -0.61
VPS11-208ENST00000621676 PURAQ00577 322 aaKnown RBP11.23□□□□□ -0.61
VPS11-208ENST00000621676 SOX4Q06945 474 aaPredicted RBP11.23□□□□□ -0.61
VPS11-208ENST00000621676 ADCY1Q08828 1119 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms