RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, human

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP1-219	ENST00000620786	SUPT20HL2	P0C7V6	817 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	GPD1	P21695	349 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	ESRRG	P62508	458 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	NCAPH	Q15003	741 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	NUDCD3	Q8IVD9	361 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	ELAC2	Q9BQ52	826 aa	Known RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	NIF3L1	Q9GZT8	377 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	SUFU	Q9UMX1	484 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	CPS1	P31327	1500 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	PRR23A	A6NEV1	266 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	GTF2H1	P32780	548 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	HIF1A	Q16665	826 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	PKN3	Q6P5Z2	889 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	SNX31	Q8N9S9	440 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	CINP	Q9BW66	212 aa	Predicted RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	TARS2	Q9BW92	718 aa	Known RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	TMEM60	Q9H2L4	133 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	METTL5	Q9NRN9	209 aa	Known RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	CAPN11	Q9UMQ6	739 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	GPAT2	Q6NUI2	795 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	SLC35G2	Q8TBE7	412 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	MTBP	Q96DY7	904 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	BTBD6	Q96KE9	485 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	MAP3K14	Q99558	947 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	MANSC4	A6NHS7	340 aa	Predicted RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	SPAG7	O75391	227 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	EGFR	P00533	1210 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	KIZ	Q2M2Z5	673 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	METTL16	Q86W50	562 aa	Known RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	GSPT2	Q8IYD1	628 aa	Known RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	HS6ST3	Q8IZP7	471 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	CPB2	Q96IY4	423 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	LRRC37B	Q96QE4	947 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	PI4K2A	Q9BTU6	479 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	SMYD3	Q9H7B4	428 aa		11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	FAF1	Q9UNN5	650 aa	Predicted RBP	11.95	□□□□□ -0.5
CLIP1-219	ENST00000620786	DNAJC8	O75937	253 aa	Predicted RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	BRD2	P25440	801 aa	Known RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	DPYD	Q12882	1025 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	P3H1	Q32P28	736 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	TRIM48	Q8IWZ4	208 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	AGR3	Q8TD06	166 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	GPR63	Q9BZJ6	419 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	XAB2	Q9HCS7	855 aa	Known RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	DIP2B	Q9P265	1576 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	SLC11A2	P49281	568 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	PPP4C	P60510	307 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	HSP90AA5P	Q58FG0	334 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	MTHFD1L	Q6UB35	978 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	POLR3C	Q9BUI4	534 aa	Predicted RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	SELENON	Q9NZV5	590 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	ZFP69B	Q9UJL9	534 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	TBX20	Q9UMR3	447 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	MSH4	O15457	936 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	VCAM1	P19320	739 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	RPA1	P27694	616 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	CATSPER3	Q86XQ3	398 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	ZNF507	Q8TCN5	953 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	PTPRN2	Q92932	1015 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	CYTH2	Q99418	400 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	LATS2	Q9NRM7	1088 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	AARS	P49588	968 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	CLCN3	P51790	818 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	CXCL9	Q07325	125 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	TMEM259	Q4ZIN3	620 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	COBLL1	Q53SF7	1204 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	SPDYA	Q5MJ70	313 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	PTRHD1	Q6GMV3	140 aa	Known RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	TSPAN17	Q96FV3	270 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	RNPC3	Q96LT9	517 aa	Known RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	PPP1R2P1	Q96PQ5	205 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	NR1H4	Q96RI1	486 aa	Predicted RBP	11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	SENP2	Q9HC62	589 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	MLXIPL	Q9NP71	852 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	UVRAG	Q9P2Y5	699 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	HDAC6	Q9UBN7	1215 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	PKP3	Q9Y446	797 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	PCDHB12	Q9Y5F1	795 aa		11.94	□□□□□ -0.5
CLIP1-219	ENST00000620786	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	ZNF286B	P0CG31	522 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	SRGN	P10124	158 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	ZNF177	Q13360	481 aa	Predicted RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	MRPS31	Q92665	395 aa	Known RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	CEP19	Q96LK0	163 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	SPATA16	Q9BXB7	569 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	SLC25A13	Q9UJS0	675 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	PQBP1	O60828	265 aa	Known RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	DHX34	Q14147	1143 aa	Known RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	SEZ6	Q53EL9	994 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	RASIP1	Q5U651	963 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	RRM2B	Q7LG56	351 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	MRPL40	Q9NQ50	206 aa	Known RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	STX18	Q9P2W9	335 aa	Known RBP	11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	KPNA6	O60684	536 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	APRT	P07741	180 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	FXR2	P51116	673 aa	Known RBP eCLIP	11.93	□□□□□ -0.5	2e-6	■■■■■ 27.8
CLIP1-219	ENST00000620786	ANTXR2	P58335	489 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	GRAMD1B	Q3KR37	738 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	CTXN3	Q4LDR2	81 aa		11.93	□□□□□ -0.5
CLIP1-219	ENST00000620786	ZRANB3	Q5FWF4	1079 aa		11.93	□□□□□ -0.5

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