RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 PLAGL2Q9UPG8 496 aa8.63□□□□□ -1.03
CPNE3-209ENST00000620393 INPP5FQ9Y2H2 1132 aa8.63□□□□□ -1.03
CPNE3-209ENST00000620393 NUB1Q9Y5A7 615 aa8.63□□□□□ -1.03
CPNE3-209ENST00000620393 NR2E3Q9Y5X4 410 aa8.63□□□□□ -1.03
CPNE3-209ENST00000620393 SIP14410 1827 aa8.63□□□□□ -1.03
CPNE3-209ENST00000620393 AMHP03971 560 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 PTMAP06454 111 aaKnown RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 SYN1P17600 705 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 PAX3P23760 479 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 DEKP35659 375 aaKnown RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 PNPLA4P41247 253 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 EPHB4P54760 987 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 MFAP3P55082 362 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ADKP55263 362 aaKnown RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 WDR5P61964 334 aaKnown RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 NOP14P78316 857 aaKnown RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 GCNT1Q02742 428 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 MYO1EQ12965 1108 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 TUSC3Q13454 348 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ARID5BQ14865 1188 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 TSR1Q2NL82 804 aaKnown RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ZNF667Q5HYK9 610 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 TMEM240Q5SV17 173 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 SPOPLQ6IQ16 392 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 GJB7Q6PEY0 223 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 DCLRE1AQ6PJP8 1040 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 RRAGAQ7L523 313 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 OTOP2Q7RTS6 562 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 CNGA4Q8IV77 575 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ARHGEF19Q8IW93 802 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ABI1Q8IZP0 508 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 PPM1KQ8N3J5 372 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 SYN2Q92777 582 aaPredicted RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 JAKMIP2Q96AA8 810 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ELMO3Q96BJ8 720 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 HPDLQ96IR7 371 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 KREMEN1Q96MU8 473 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 LBHD1Q9BQE6 289 aaPredicted RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 NLRC4Q9NPP4 1024 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 TBC1D13Q9NVG8 400 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 ZMYND8Q9ULU4 1186 aaPredicted RBP8.62□□□□□ -1.03
CPNE3-209ENST00000620393 FHOD1Q9Y613 1164 aa8.62□□□□□ -1.03
CPNE3-209ENST00000620393 FOXN3O00409 490 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 PPEF2O14830 753 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 MFAP3LO75121 409 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 DGKIO75912 1065 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 DDHD2O94830 711 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 UPP2O95045 317 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 ALDH2P05091 517 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 FAM163BP0C2L3 166 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 P4HA1P13674 534 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 TBXAS1P24557 533 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 HNRNPH3P31942 346 aaKnown RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 STAT1P42224 750 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 GATMP50440 423 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 JAM2P57087 298 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 LILRA4P59901 499 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 DEFB103AP81534 67 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 DSC1Q08554 894 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 GOLGA8FQ08AF8 430 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 GOLGA8DPQ0D2H9 430 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 CUL2Q13617 745 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 DRAP1Q14919 205 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 UPP1Q16831 310 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 ARHGAP44Q17R89 818 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 ZNF699Q32M78 642 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 WDR72Q3MJ13 1102 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 PDXDC1Q6P996 788 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 PSRC1Q6PGN9 363 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 ZNF280BQ86YH2 543 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 COLGALT2Q8IYK4 626 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 HERVK_113Q902F9 699 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 KAT5Q92993 513 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 UROC1Q96N76 676 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 FAM193BQ96PV7 902 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 SPAG5Q96R06 1193 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 PANX2Q96RD6 677 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 DNAJC7Q99615 494 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 NIF3L1Q9GZT8 377 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 CYP3A43Q9HB55 503 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 GOLGA2P5Q9HBQ8 144 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 GDAP2Q9NXN4 497 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 AIPL1Q9NZN9 384 aa8.61□□□□□ -1.03
CPNE3-209ENST00000620393 NXF1Q9UBU9 619 aaKnown RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 AJAP1Q9UKB5 411 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-209ENST00000620393 CASTOR2A6NHX0 329 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 LRRC53A6NM62 1247 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 TBKBP1A7MCY6 615 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 KPNA7A9QM74 516 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 PODXLO00592 558 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 SPTLC1O15269 473 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 ACO1P21399 889 aaKnown RBP8.6□□□□□ -1.03
CPNE3-209ENST00000620393 IGFBP6P24592 240 aaPredicted RBP8.6□□□□□ -1.03
CPNE3-209ENST00000620393 SOX5P35711 763 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 KCNJ6P48051 423 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 TAF6P49848 677 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 CLCNKBP51801 687 aa8.6□□□□□ -1.03
CPNE3-209ENST00000620393 LSM11P83369 360 aaKnown RBP eCLIP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms