RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RRP1BQ14684 758 aaKnown RBP9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 MDH1BQ5I0G3 518 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 LRRC31Q6UY01 552 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 PCGF5Q86SE9 256 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 FAM71DQ8N9W8 422 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 SMC1BQ8NDV3 1235 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 APPL2Q8NEU8 664 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 EPN3Q9H201 632 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 GANQ9H2C0 597 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 GPATCH2LQ9NWQ4 482 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 DPP3Q9NY33 737 aa9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 MRPL42Q9Y6G3 142 aaKnown RBP9.43□□□□□ -0.9
PDLIM5-222ENST00000615540 RRM1P23921 792 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 NAMPTP43490 491 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 KIZQ2M2Z5 673 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 C4orf50Q6ZRC1 276 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ASAP3Q8TDY4 903 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 HPDLQ96IR7 371 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 NIF3L1Q9GZT8 377 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ERAP1Q9NZ08 941 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 AIPL1Q9NZN9 384 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 TXNDC9O14530 226 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 MAFGO15525 162 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 LPXNO60711 386 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 KRT7P08729 469 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 RARBP10826 455 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 PDGFRAP16234 1089 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SLC29A2Q14542 456 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 MUM1Q2TAK8 710 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 IER5Q5VY09 327 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 LRIG3Q6UXM1 1119 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 CREG2Q8IUH2 290 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ANKRD13AQ8IZ07 590 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 PPFIBP2Q8ND30 876 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ATP8B4Q8TF62 1192 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 COPS5Q92905 334 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 KLF6Q99612 283 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 CGRRF1Q99675 332 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ERP44Q9BS26 406 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 NEU2Q9Y3R4 380 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SNHG28P0DPA3 235 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 HNRNPLLQ8WVV9 542 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 BAP1Q92560 729 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 CLMNQ96JQ2 1002 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 TRAIPQ9BWF2 469 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 TLR10Q9BXR5 811 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ADARB2Q9NS39 739 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 NUP98P52948 1817 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SLIT2O94813 1529 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SLC25A27O95847 323 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 RASSF2P50749 326 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SNRPFP62306 86 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ITGB3BPQ13352 177 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 BYSLQ13895 437 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 KYNUQ16719 465 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SLC13A5Q86YT5 568 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 MCUQ8NE86 351 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 PPP1R36Q96LQ0 422 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 RBM15Q96T37 977 aaKnown RBP eCLIP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SIK2Q9H0K1 926 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 TSR3Q9UJK0 312 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 GJB1P08034 283 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 STAG3L1P0CL83 205 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 NCF2P19878 526 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 CAV1Q03135 178 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 WDR93Q6P2C0 686 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 RYBPQ8N488 228 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 ZSWIM2Q8NEG5 633 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 RDM1Q8NG50 284 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 USP33Q8TEY7 942 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 SPATC1LQ9H0A9 340 aa9.42□□□□□ -0.9
PDLIM5-222ENST00000615540 TJP1Q07157 1748 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 MARF1Q9Y4F3 1742 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 LRRC10BA6NIK2 292 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 COPEO14579 308 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 MYBL2P10244 700 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 EPHX2P34913 555 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 BCAR1P56945 870 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 RBP5P82980 135 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 PPATQ06203 517 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 FAXCQ5TGI0 409 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 SV2AQ7L0J3 742 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 MED15Q96RN5 788 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 OSBPL8Q9BZF1 889 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 C10orf88Q9H8K7 445 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 KIF9Q9HAQ2 790 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 TPX2Q9ULW0 747 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 ATP8B3O60423 1300 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 HSPA9P38646 679 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 TMEM132BQ14DG7 1078 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 HIF1AQ16665 826 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 ARL13BQ3SXY8 428 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 HEATR6Q6AI08 1181 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 XRRA1Q6P2D8 792 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 CHMP6Q96FZ7 201 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 DDX23Q9BUQ8 820 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 A1CFQ9NQ94 594 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 CHMP2BQ9UQN3 213 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 PLCH1Q4KWH8 1693 aa9.41□□□□□ -0.9
PDLIM5-222ENST00000615540 A0A087WZ62 844 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms