RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 RTP2Q5QGT7 225 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ANKRD40Q6AI12 368 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 TTI2Q6NXR4 508 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 LILRA6Q6PI73 481 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 CD300LGQ6UXG3 332 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 CRELD2Q6UXH1 353 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 PPFIBP1Q86W92 1011 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 TMEM130Q8N3G9 435 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 CEP120Q8N960 986 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 MLKLQ8NB16 471 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ZSWIM2Q8NEG5 633 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ST13P5Q8NFI4 369 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 RSAD2Q8WXG1 361 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 RUBCNQ92622 972 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ZNF707Q96C28 371 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ACCSQ96QU6 501 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 DUSP9Q99956 384 aaKnown RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 MRPL4Q9BYD3 311 aaKnown RBP9.52□□□□□ -0.89
TRIM28-214ENST00000600840 SEMA4AQ9H3S1 761 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 TMEM206Q9H813 350 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 SFXN1Q9H9B4 322 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 AGPAT3Q9NRZ7 376 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 ADAM28Q9UKQ2 775 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 DUSP12Q9UNI6 340 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 MAPK8IP1Q9UQF2 711 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 DMXL1Q9Y485 3027 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 UBE4BO95155 1302 aa9.52□□□□□ -0.89
TRIM28-214ENST00000600840 COL4A3Q01955 1670 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CCDC195A0A1B0GUA6 201 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CARNS1A5YM72 827 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 TGM5O43548 720 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 TOM1L1O75674 476 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 LETM1O95202 739 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 KIF4AO95239 1232 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 DCNP07585 359 aaKnown RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 SP9P0CG40 484 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 GARTP22102 1010 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CCNE1P24864 410 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 ATXN1P54253 815 aaKnown RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 SNRPFP62306 86 aaKnown RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 TYRO3Q06418 890 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 TDGQ13569 410 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CT47A1Q5JQC4 288 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 GLRA4Q5JXX5 417 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 ATF7IP2Q5U623 682 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 ALKAL1Q6UXT8 129 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 SLC9A9Q8IVB4 645 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 NELFCDQ8IXH7 590 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 SUMF1Q8NBK3 374 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 DHTKD1Q96HY7 919 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 MYADMQ96S97 322 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CBWD1Q9BRT8 395 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 COLEC11Q9BWP8 271 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 GZF1Q9H116 711 aaPredicted RBP9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CDT1Q9H211 546 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 CA14Q9ULX7 337 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 USTQ9Y2C2 406 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 NOTCH4Q99466 2003 aa9.51□□□□□ -0.89
TRIM28-214ENST00000600840 MYH11P35749 1972 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 SYCE3A1L190 88 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 DCDC2BA2VCK2 349 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 N4BP3O15049 544 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 TADA2AO75478 443 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 GLUD1P00367 558 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 ADH1AP07327 375 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 MCF2P10911 925 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 ERCC5P28715 1186 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 ZNF445P59923 1031 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 SOX4Q06945 474 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 STRN3Q13033 797 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 TUSC3Q13454 348 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 COL9A2Q14055 689 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 MYBPC2Q14324 1141 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 HSP90AA2PQ14568 343 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 NCAPHQ15003 741 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 USP41Q3LFD5 358 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 XKR4Q5GH76 650 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 ZBTB41Q5SVQ8 909 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 MPZL3Q6UWV2 235 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 RSPO2Q6UXX9 243 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CCDC149Q6ZUS6 474 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 C11orf57Q6ZUT1 292 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CEP57Q86XR8 500 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 IRF2BP1Q8IU81 584 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 PLCD3Q8N3E9 789 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 C3orf58Q8NDZ4 430 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CMASQ8NFW8 434 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 LNX1Q8TBB1 728 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CCDC47Q96A33 483 aaKnown RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 SYAP1Q96A49 352 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 BORCS6Q96GS4 357 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CLSTN3Q9BQT9 956 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 KCNK12Q9HB15 430 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 GOLGA2P5Q9HBQ8 144 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CGNQ9P2M7 1197 aaKnown RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 CPSF3Q9UKF6 684 aaKnown RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 OTOGLQ3ZCN5 2332 aa9.5□□□□□ -0.89
TRIM28-214ENST00000600840 TPRP12270 2363 aaKnown RBP9.5□□□□□ -0.89
TRIM28-214ENST00000600840 EPG5Q9HCE0 2579 aa9.49□□□□□ -0.89
TRIM28-214ENST00000600840 CACNA1GO43497 2377 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms