RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SMAD4Q13485 552 aaKnown RBP19.63■□□□□ 0.73
LIG1-216ENST00000598938 STX1AQ16623 288 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 C1orf220Q5T0J3 134 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 CSGALNACT2Q8N6G5 542 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 ZNF516Q92618 1163 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 HERC2P3Q9BVR0 1158 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 GPR62Q9BZJ7 368 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 ZBP1Q9H171 429 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 TLR9Q9NR96 1032 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 ANO10Q9NW15 660 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 ITGA11Q9UKX5 1188 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 TECTAO75443 2155 aa19.63■□□□□ 0.73
LIG1-216ENST00000598938 TNNC2P02585 160 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 SOD2P04179 222 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 KRT13P13646 458 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 VAMP7P51809 220 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 AP3M2P53677 418 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 ERVFC1P60507 584 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 TYRO3Q06418 890 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 HYAL1Q12794 435 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 BFSP1Q12934 665 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 TAS1R1Q7RTX1 841 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 BMP8AQ7Z5Y6 402 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 VPS52Q8N1B4 723 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 PPP2R3CQ969Q6 453 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 SIX4Q9UIU6 781 aa19.62■□□□□ 0.73
LIG1-216ENST00000598938 IKBKBO14920 756 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 ITGB3P05106 788 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 PAX3P23760 479 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 AARSP49588 968 aaKnown RBP eCLIP19.61■□□□□ 0.73
LIG1-216ENST00000598938 ELAVL2Q12926 359 aaKnown RBP19.61■□□□□ 0.73
LIG1-216ENST00000598938 PDE12Q6L8Q7 609 aaKnown RBP19.61■□□□□ 0.73
LIG1-216ENST00000598938 TRAPPC11Q7Z392 1133 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 USP37Q86T82 979 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 PRRX2Q99811 253 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 SRRTQ9BXP5 876 aaKnown RBP19.61■□□□□ 0.73
LIG1-216ENST00000598938 CHST7Q9NS84 486 aa19.61■□□□□ 0.73
LIG1-216ENST00000598938 TRAPPC3O43617 180 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 FGFR1OPO95684 399 aaKnown RBP19.6■□□□□ 0.73
LIG1-216ENST00000598938 CTSAP10619 480 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 POLR2BP30876 1174 aaKnown RBP19.6■□□□□ 0.73
LIG1-216ENST00000598938 BRCC3P46736 316 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 LILRA4P59901 499 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 SCARA3Q6AZY7 606 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 C11orf57Q6ZUT1 292 aaPredicted RBP19.6■□□□□ 0.73
LIG1-216ENST00000598938 TMC7Q7Z402 723 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 FRMD5Q7Z6J6 570 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 LRRC52Q8N7C0 313 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 SUSD3Q96L08 255 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 TCF25Q9BQ70 676 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 FUCA2Q9BTY2 467 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 METTL14Q9HCE5 456 aaKnown RBP19.6■□□□□ 0.73
LIG1-216ENST00000598938 NGRNQ9NPE2 291 aaKnown RBP19.6■□□□□ 0.73
LIG1-216ENST00000598938 ARMCX3Q9UH62 379 aaPredicted RBP19.6■□□□□ 0.73
LIG1-216ENST00000598938 CD207Q9UJ71 328 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 AGAP1Q9UPQ3 857 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 NUB1Q9Y5A7 615 aa19.6■□□□□ 0.73
LIG1-216ENST00000598938 I3L4J1 428 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 SPTLC1O15269 473 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 TBX10O75333 385 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 GNA14O95837 355 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 C4BPAP04003 597 aaKnown RBP19.59■□□□□ 0.73
LIG1-216ENST00000598938 TRIM49P0CI25 452 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 TRIM49CP0CI26 452 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 PNPLA4P41247 253 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 MARSP56192 900 aaKnown RBP19.59■□□□□ 0.73
LIG1-216ENST00000598938 RBP5P82980 135 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 DLX2Q07687 328 aaPredicted RBP19.59■□□□□ 0.73
LIG1-216ENST00000598938 USP41Q3LFD5 358 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 TDRD10Q5VZ19 366 aaKnown RBP19.59■□□□□ 0.73
LIG1-216ENST00000598938 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.59■□□□□ 0.73
LIG1-216ENST00000598938 C15orf39Q6ZRI6 1047 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 RNF135Q8IUD6 432 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 GPR65Q8IYL9 337 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 EDAQ92838 391 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 ZNF560Q96MR9 790 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 ENTPD7Q9NQZ7 604 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 MUTYHQ9UIF7 546 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 PCDHGC5Q9Y5F6 944 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 IRAK3Q9Y616 596 aa19.59■□□□□ 0.73
LIG1-216ENST00000598938 SYCE3A1L190 88 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 M0QZQ0 153 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 LILRB3O75022 631 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 CSPG5O95196 566 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 FGFR3P22607 806 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 GTF2H1P32780 548 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 GLUD2P49448 558 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 TAF6P49848 677 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 DSG1Q02413 1049 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 PPP3CAQ08209 521 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 ADAM15Q13444 863 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 SMC1AQ14683 1233 aaKnown RBP19.58■□□□□ 0.72
LIG1-216ENST00000598938 PTPN14Q15678 1187 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 ZACNQ401N2 412 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 CCDC40Q4G0X9 1142 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 FAM171A1Q5VUB5 890 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 KIAA0319Q5VV43 1072 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 PLPP4Q5VZY2 271 aa19.58■□□□□ 0.72
LIG1-216ENST00000598938 MRPL43Q8N983 215 aaKnown RBP19.58■□□□□ 0.72
LIG1-216ENST00000598938 TTPALQ9BTX7 342 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms