RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 KCNF1Q9H3M0 494 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 FAM124BQ9H5Z6 455 aaPredicted RBP16.57■□□□□ 0.24
UPF1-206ENST00000598471 CYP3A43Q9HB55 503 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 RNF19AQ9NV58 838 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 MIOSQ9NXC5 875 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 NXF1Q9UBU9 619 aaKnown RBP16.57■□□□□ 0.24
UPF1-206ENST00000598471 RBAK-RBAKDNI3L0D1 243 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 PIRO00625 290 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 GFPT2O94808 682 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 FGFR1P11362 822 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 KRT5P13647 590 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 ARID5AQ03989 594 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 RNASELQ05823 741 aaKnown RBP16.56■□□□□ 0.24
UPF1-206ENST00000598471 FPGSQ05932 587 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 SOX4Q06945 474 aaPredicted RBP16.56■□□□□ 0.24
UPF1-206ENST00000598471 KLHL30Q0D2K2 578 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 CLLU1OSQ5K130 101 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 SCARA5Q6ZMJ2 495 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 VPS36Q86VN1 386 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 KAT5Q92993 513 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 FAM193BQ96PV7 902 aaPredicted RBP16.56■□□□□ 0.24
UPF1-206ENST00000598471 DEF6Q9H4E7 631 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 GOLGA2P5Q9HBQ8 144 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 ALPK3Q96L96 1907 aa16.56■□□□□ 0.24
UPF1-206ENST00000598471 FOXN3O00409 490 aaPredicted RBP16.55■□□□□ 0.24
UPF1-206ENST00000598471 PODXLO00592 558 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 CYLC1P35663 651 aaPredicted RBP16.55■□□□□ 0.24
UPF1-206ENST00000598471 KCNJ6P48051 423 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 AFF1P51825 1210 aaKnown RBP16.55■□□□□ 0.24
UPF1-206ENST00000598471 BPIFB4P59827 614 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 NAB2Q15742 525 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 WDR59Q6PJI9 974 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 TMEM139Q8IV31 216 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 FAM71AQ8IYT1 594 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 CCDC170Q8IYT3 715 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 ELMO3Q96BJ8 720 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 BCO2Q9BYV7 579 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 GPR88Q9GZN0 384 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 DNAI2Q9GZS0 605 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 PCDHB4Q9Y5E5 795 aa16.55■□□□□ 0.24
UPF1-206ENST00000598471 SSU72P8A0A1W2PR75 194 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 CASTOR2A6NHX0 329 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 KPNA7A9QM74 516 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 PPEF2O14830 753 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 IPO7O95373 1038 aaKnown RBP16.54■□□□□ 0.24
UPF1-206ENST00000598471 ANXA13P27216 316 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 PRKCIP41743 596 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 ASPAP45381 313 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 E4F1Q66K89 784 aaPredicted RBP16.54■□□□□ 0.24
UPF1-206ENST00000598471 PSRC1Q6PGN9 363 aaPredicted RBP16.54■□□□□ 0.24
UPF1-206ENST00000598471 BADQ92934 168 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 CCDC42Q96M95 316 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 MMS19Q96T76 1030 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 ARID3AQ99856 593 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 TBC1D13Q9NVG8 400 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 POLIQ9UNA4 740 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 ZKSCAN5Q9Y2L8 839 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 SNX9Q9Y5X1 595 aa16.54■□□□□ 0.24
UPF1-206ENST00000598471 TRIP11Q15643 1979 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 ARHGEF37A1IGU5 675 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 SOWAHDA6NJG2 315 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 FGBP02675 491 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 PNMA6AP0CW24 399 aaPredicted RBP16.53■□□□□ 0.24
UPF1-206ENST00000598471 ACRP10323 421 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 CD58P19256 250 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 PDE6CP51160 858 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 MAPK8IP2Q13387 824 aaPredicted RBP16.53■□□□□ 0.24
UPF1-206ENST00000598471 SCARA3Q6AZY7 606 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 TMEM270Q6UE05 265 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.53■□□□□ 0.24
UPF1-206ENST00000598471 IRF2BP2Q7Z5L9 587 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 LRRC43Q8N309 656 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 TMEM130Q8N3G9 435 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 RBBP8NLQ8NC74 664 aaPredicted RBP16.53■□□□□ 0.24
UPF1-206ENST00000598471 TET1Q8NFU7 2136 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 VWCEQ96DN2 955 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 CASD1Q96PB1 797 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 CHP1Q99653 195 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 LBHD1Q9BQE6 289 aaPredicted RBP16.53■□□□□ 0.24
UPF1-206ENST00000598471 SMYD3Q9H7B4 428 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 NHEJ1Q9H9Q4 299 aaPredicted RBP16.53■□□□□ 0.24
UPF1-206ENST00000598471 CISHQ9NSE2 258 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 GDAP2Q9NXN4 497 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 ARHGAP20Q9P2F6 1191 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 MICAL3Q7RTP6 2002 aa16.53■□□□□ 0.24
UPF1-206ENST00000598471 TNRC18O15417 2968 aaPredicted RBP16.52■□□□□ 0.24
UPF1-206ENST00000598471 TBKBP1A7MCY6 615 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 AKR1B10O60218 316 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 HUS1O60921 280 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 UPP2O95045 317 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 WEE2P0C1S8 567 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 ACO1P21399 889 aaKnown RBP16.52■□□□□ 0.24
UPF1-206ENST00000598471 CLCNKBP51801 687 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 LILRA4P59901 499 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 WDR5P61964 334 aaKnown RBP16.52■□□□□ 0.24
UPF1-206ENST00000598471 PTK2Q05397 1052 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 DSC1Q08554 894 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 UPP1Q16831 310 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 HGSNATQ68CP4 663 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 DCLRE1AQ6PJP8 1040 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms