RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PPP2R3AQ06190 1150 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 DCAF17Q5H9S7 520 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 TCERG1LQ5VWI1 586 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 FAM43BQ6ZT52 329 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 CBWD2Q8IUF1 395 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 CMTR2Q8IYT2 770 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 APOL5Q9BWW9 433 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 FTHL17Q9BXU8 183 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 HAPLN2Q9GZV7 340 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 TAB2Q9NYJ8 693 aa13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 DSPP15924 2871 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-213ENST00000597325 DMXL2Q8TDJ6 3036 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 CLTAP09496 248 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 SKIP12755 728 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 HOXB8P17481 243 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 GRM5P41594 1212 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 YARSP54577 528 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 MARSP56192 900 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 OSTNP61366 133 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 FANCCQ00597 558 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 CYP24A1Q07973 514 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 BFSP1Q12934 665 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 KRT31Q15323 416 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 MAN2A1Q16706 1144 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 ZC3H14Q6PJT7 736 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 IRF2BP1Q8IU81 584 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 ZDHHC14Q8IZN3 488 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 RIN2Q8WYP3 895 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 ANP32BQ92688 251 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 FNBP1Q96RU3 617 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 ADAM2Q99965 735 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 TUBGCP2Q9BSJ2 902 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 RTKNQ9BST9 563 aa13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 EIF2AQ9BY44 585 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 RPF1Q9H9Y2 349 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 TOPORSQ9NS56 1045 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 LIMA1Q9UHB6 759 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-213ENST00000597325 BPTFQ12830 3046 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 FSCN2O14926 492 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 STX10O60499 249 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 IL18RAPO95256 599 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 ADRB2P07550 413 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 STAG3L1P0CL83 205 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 TNFSF9P41273 254 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 VAMP7P51809 220 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 COPB1P53618 953 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 ERVFC1P60507 584 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 UBE3AQ05086 875 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 SURF1Q15526 300 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 SEZ6Q53EL9 994 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 ZBTB41Q5SVQ8 909 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 FKBP15Q5T1M5 1219 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 SARM1Q6SZW1 724 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 BRSK2Q8IWQ3 736 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 ZSWIM2Q8NEG5 633 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 CCDC127Q96BQ5 260 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 FAM212AQ96EL1 285 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 ACAP3Q96P50 834 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 APOL6Q9BWW8 343 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 TRIM5Q9C035 493 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 TMX1Q9H3N1 280 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 NXF3Q9H4D5 531 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 C1orf112Q9NSG2 853 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 FAM105AQ9NUU6 356 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 LIMD1Q9UGP4 676 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 CPSF3Q9UKF6 684 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 IPPQ9Y573 584 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 PCDHB2Q9Y5E7 798 aa13.03□□□□□ -0.32
SHKBP1-213ENST00000597325 PRR5-ARHGAP8B1AHC4 643 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 FAM189A1O60320 539 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 N4BP1O75113 896 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 SP9P0CG40 484 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 CXCL8P10145 99 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 DLATP10515 647 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 IBSPP21815 317 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 UBASH3AP57075 661 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 ARHGAP8P85298 464 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 POU5F1Q01860 360 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 ENPEPQ07075 957 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 DSC3Q14574 896 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 PSMD6Q15008 389 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 UBXN11Q5T124 520 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 TRIM59Q8IWR1 403 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 CEP120Q8N960 986 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 TMC2Q8TDI7 906 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 LINC01599Q8WXQ3 324 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 PGBD4Q96DM1 585 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 NECTIN4Q96NY8 510 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 VPS16Q9H269 839 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 IFNKQ9P0W0 207 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 PARP2Q9UGN5 583 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 CDV3Q9UKY7 258 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 CACNA1IQ9P0X4 2223 aa13.02□□□□□ -0.33
SHKBP1-213ENST00000597325 LGALS16A8MUM7 142 aa13.01□□□□□ -0.33
SHKBP1-213ENST00000597325 MGEA5O60502 916 aa13.01□□□□□ -0.33
SHKBP1-213ENST00000597325 RECQL4O94761 1208 aa13.01□□□□□ -0.33
SHKBP1-213ENST00000597325 AFPP02771 609 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-213ENST00000597325 TRIM49P0CI25 452 aa13.01□□□□□ -0.33
SHKBP1-213ENST00000597325 TRIM49CP0CI26 452 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms