RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TUSC3Q13454 348 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 WDR59Q6PJI9 974 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.72■□□□□ 0.11
VRK3-212ENST00000596814 BADQ92934 168 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 JAKMIP2Q96AA8 810 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 KANSL3Q9P2N6 904 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 POLIQ9UNA4 740 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 FNDC1Q4ZHG4 1894 aaPredicted RBP15.72■□□□□ 0.11
VRK3-212ENST00000596814 CASTOR2A6NHX0 329 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 FOXN3O00409 490 aaPredicted RBP15.71■□□□□ 0.11
VRK3-212ENST00000596814 GFPT2O94808 682 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 BAIAP3O94812 1187 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 SKILP12757 684 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 FERP16591 822 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 TAF6P49848 677 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 ARID5AQ03989 594 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 SV2CQ496J9 727 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 CYP26C1Q6V0L0 522 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 CRIPAKQ8N1N5 446 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 RSPH1Q8WYR4 309 aa15.71■□□□□ 0.11
VRK3-212ENST00000596814 PODXLO00592 558 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 AMHP03971 560 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 CCDC172P0C7W6 258 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 RPL9P32969 192 aaKnown RBP15.71■□□□□ 0.1
VRK3-212ENST00000596814 USP8P40818 1118 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 YWHAEP62258 255 aaKnown RBP15.71■□□□□ 0.1
VRK3-212ENST00000596814 CDK17Q00537 523 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 RNASELQ05823 741 aaKnown RBP15.71■□□□□ 0.1
VRK3-212ENST00000596814 TDRD12Q587J7 1177 aaKnown RBP15.71■□□□□ 0.1
VRK3-212ENST00000596814 TMTC1Q8IUR5 882 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 UROC1Q96N76 676 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 BCO2Q9BYV7 579 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 TBC1D13Q9NVG8 400 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 CACNG4Q9UBN1 327 aa15.71■□□□□ 0.1
VRK3-212ENST00000596814 SERPING1P05155 500 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 KRT5P13647 590 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 SYN1P17600 705 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 GATMP50440 423 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 CLCNKBP51801 687 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 WDR5P61964 334 aaKnown RBP15.7■□□□□ 0.1
VRK3-212ENST00000596814 KLHL30Q0D2K2 578 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 HGSNATQ68CP4 663 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 FAM71AQ8IYT1 594 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 DDX27Q96GQ7 796 aaKnown RBP15.7■□□□□ 0.1
VRK3-212ENST00000596814 CASD1Q96PB1 797 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 CHP1Q99653 195 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 MRPL9Q9BYD2 267 aaKnown RBP15.7■□□□□ 0.1
VRK3-212ENST00000596814 SMYD3Q9H7B4 428 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 CYP3A43Q9HB55 503 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 PCDHB4Q9Y5E5 795 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 SNX9Q9Y5X1 595 aa15.7■□□□□ 0.1
VRK3-212ENST00000596814 SOWAHDA6NJG2 315 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 ARHGAP6O43182 974 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 UPP2O95045 317 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 WEE2P0C1S8 567 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 CD58P19256 250 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 ACO1P21399 889 aaKnown RBP15.69■□□□□ 0.1
VRK3-212ENST00000596814 PRKCIP41743 596 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 RAP1GAPP47736 663 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 KCNJ6P48051 423 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 LILRA4P59901 499 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 DSC1Q08554 894 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 UPP1Q16831 310 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 OTOP2Q7RTS6 562 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 IRF2BP2Q7Z5L9 587 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 UBR7Q8N806 425 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 FAM193BQ96PV7 902 aaPredicted RBP15.69■□□□□ 0.1
VRK3-212ENST00000596814 MMS19Q96T76 1030 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 CISHQ9NSE2 258 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 ARHGAP20Q9P2F6 1191 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 ZMYND8Q9ULU4 1186 aaPredicted RBP15.69■□□□□ 0.1
VRK3-212ENST00000596814 BZW2Q9Y6E2 419 aaKnown RBP15.69■□□□□ 0.1
VRK3-212ENST00000596814 PTPRSQ13332 1948 aa15.69■□□□□ 0.1
VRK3-212ENST00000596814 TBKBP1A7MCY6 615 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 KPNA7A9QM74 516 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 SPTLC1O15269 473 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 DEFB103AP81534 67 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 SMYD5Q6GMV2 418 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 PSRC1Q6PGN9 363 aaPredicted RBP15.68■□□□□ 0.1
VRK3-212ENST00000596814 ZNF280BQ86YH2 543 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 LRRC43Q8N309 656 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 DPF3Q92784 378 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 TOP1MTQ969P6 601 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 PAAF1Q9BRP4 392 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 SDCBP2Q9H190 292 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 FAM124BQ9H5Z6 455 aaPredicted RBP15.68■□□□□ 0.1
VRK3-212ENST00000596814 GDAP2Q9NXN4 497 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 SSU72P8A0A1W2PR75 194 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 CYP26A1O43174 497 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 B4GALT3O60512 393 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 DDHD2O94830 711 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 FGBP02675 491 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 PLEKP08567 350 aaPredicted RBP15.68■□□□□ 0.1
VRK3-212ENST00000596814 TMEM270Q6UE05 265 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 ZNF365Q70YC5 407 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 C16orf59Q7L2K0 433 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 COLGALT2Q8IYK4 626 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 RBBP8NLQ8NC74 664 aaPredicted RBP15.68■□□□□ 0.1
VRK3-212ENST00000596814 C3orf58Q8NDZ4 430 aa15.68■□□□□ 0.1
VRK3-212ENST00000596814 RABGGTAQ92696 567 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms