RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PAPLNO95428 1278 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 VNN2O95498 520 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 ITGB3P05106 788 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 BMP6P22004 513 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 POLR2BP30876 1174 aaKnown RBP12.05□□□□□ -0.48
VRK3-210ENST00000596121 PRCPP42785 496 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 CBX2Q14781 532 aaPredicted RBP12.05□□□□□ -0.48
VRK3-210ENST00000596121 PSMD6Q15008 389 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 ZCWPW2Q504Y3 356 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 ISM2Q6H9L7 571 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 SLC8B1Q6J4K2 584 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 DSTYKQ6XUX3 929 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 CLEC17AQ6ZS10 378 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 ANKS3Q6ZW76 656 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 GPR149Q86SP6 731 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 NT5DC4Q86YG4 428 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 SLC9A9Q8IVB4 645 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 GUF1Q8N442 669 aaKnown RBP12.05□□□□□ -0.48
VRK3-210ENST00000596121 CCDC127Q96BQ5 260 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 RTP3Q9BQQ7 232 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 POMKQ9H5K3 350 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 KIAA1586Q9HCI6 787 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 DZANK1Q9NVP4 752 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 CGNQ9P2M7 1197 aaKnown RBP12.05□□□□□ -0.48
VRK3-210ENST00000596121 FBXW11Q9UKB1 542 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 AGAP1Q9UPQ3 857 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 TRAF3IP3Q9Y228 551 aa12.05□□□□□ -0.48
VRK3-210ENST00000596121 CCDC195A0A1B0GUA6 201 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 WDR27A2RRH5 827 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 EXOC3O60645 756 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 ABLIM3O94929 683 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 SEC24AO95486 1093 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 C1RP00736 705 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 CST3P01034 146 aaPredicted RBP12.04□□□□□ -0.48
VRK3-210ENST00000596121 NR3C1P04150 777 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 OR4Q2P0C623 313 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 SRGAP2BP0DMP2 458 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 CD44P16070 742 aaKnown RBP12.04□□□□□ -0.48
VRK3-210ENST00000596121 PMS1P54277 932 aaKnown RBP12.04□□□□□ -0.48
VRK3-210ENST00000596121 ARPP19P56211 112 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 DLG4P78352 724 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 ROR1Q01973 937 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 CREMQ03060 361 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 ITIH3Q06033 890 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 CTXN3Q4LDR2 81 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 C1orf220Q5T0J3 134 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 PDXDC1Q6P996 788 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 ADHFE1Q8IWW8 467 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 ELOA2Q8IYF1 753 aaPredicted RBP12.04□□□□□ -0.48
VRK3-210ENST00000596121 CSGALNACT2Q8N6G5 542 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 APPL2Q8NEU8 664 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 CMASQ8NFW8 434 aaPredicted RBP12.04□□□□□ -0.48
VRK3-210ENST00000596121 SMARCE1Q969G3 411 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 GSDMAQ96QA5 445 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 TMEM209Q96SK2 561 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 SFXN1Q9H9B4 322 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 MAN1B1Q9UKM7 699 aa12.04□□□□□ -0.48
VRK3-210ENST00000596121 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.04□□□□□ -0.48
VRK3-210ENST00000596121 DOCK6Q96HP0 2047 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 LRRIQ3A6PVS8 624 aaPredicted RBP12.03□□□□□ -0.48
VRK3-210ENST00000596121 CYB561D2O14569 222 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 ZMYND10O75800 440 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 CYP11A1P05108 521 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 DLATP10515 647 aaKnown RBP12.03□□□□□ -0.48
VRK3-210ENST00000596121 TYMPP19971 482 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 TAF6P49848 677 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 CDR1P51861 262 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 UBE2HP62256 183 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 DUOXA2Q1HG44 320 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 ZNF658Q5TYW1 1059 aaPredicted RBP12.03□□□□□ -0.48
VRK3-210ENST00000596121 WSCD1Q658N2 575 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 TRAPPC11Q7Z392 1133 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 WDR49Q8IV35 697 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 ADSSL1Q8N142 457 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 GJD3Q8N144 294 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 OR10T2Q8NGX3 314 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 GOLGA5Q8TBA6 731 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 HDAC7Q8WUI4 952 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 CACTINQ8WUQ7 758 aaKnown RBP12.03□□□□□ -0.48
VRK3-210ENST00000596121 CCDC47Q96A33 483 aaKnown RBP12.03□□□□□ -0.48
VRK3-210ENST00000596121 ELMO3Q96BJ8 720 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 CGRRF1Q99675 332 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 PLEKHA4Q9H4M7 779 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 PRKAG3Q9UGI9 489 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 ITGA11Q9UKX5 1188 aa12.03□□□□□ -0.48
VRK3-210ENST00000596121 MTCL1Q9Y4B5 1905 aaKnown RBP12.02□□□□□ -0.49
VRK3-210ENST00000596121 KPNA7A9QM74 516 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 LOC730098B7Z3J9 87 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 H7C4K7 107 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 TNFRSF10AO00220 468 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 HCRTO43612 131 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 KINO60870 393 aaKnown RBP12.02□□□□□ -0.49
VRK3-210ENST00000596121 AKAP3O75969 853 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 SMC2O95347 1197 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 C8AP07357 584 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 TMEM191BP0C7N4 346 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 SP100P23497 879 aaPredicted RBP12.02□□□□□ -0.49
VRK3-210ENST00000596121 CLDN10P78369 228 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 RBP5P82980 135 aa12.02□□□□□ -0.49
VRK3-210ENST00000596121 YWHAHQ04917 246 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms