RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PPEF2O14830 753 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 LILRA4P59901 499 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 YWHAHQ04917 246 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-206ENST00000595974 UVSSAQ2YD98 709 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 CTXN3Q4LDR2 81 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 PPM1LQ5SGD2 360 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 DSTYKQ6XUX3 929 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 HS2ST1Q7LGA3 356 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 PIDD1Q9HB75 910 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 KIAA1586Q9HCI6 787 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 WDR6Q9NNW5 1121 aaKnown RBP17.54■□□□□ 0.4
TRIM28-206ENST00000595974 SLC39A2Q9NP94 309 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 AGPAT3Q9NRZ7 376 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 DPP3Q9NY33 737 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 HSPBP1Q9NZL4 362 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 CGNQ9P2M7 1197 aaKnown RBP17.54■□□□□ 0.4
TRIM28-206ENST00000595974 FBXL5Q9UKA1 691 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 POU2F2P09086 479 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 ODC1P11926 461 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 TYMPP19971 482 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 WNT7BP56706 349 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 PSMD2Q13200 908 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 OTOP3Q7RTS5 596 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 USP37Q86T82 979 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 NELFCDQ8IXH7 590 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 ZDHHC14Q8IZN3 488 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 PLCD3Q8N3E9 789 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 ZNF461Q8TAF7 563 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 SLC7A14Q8TBB6 771 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 NOC3LQ8WTT2 800 aaKnown RBP17.53■□□□□ 0.4
TRIM28-206ENST00000595974 CACTINQ8WUQ7 758 aaKnown RBP17.53■□□□□ 0.4
TRIM28-206ENST00000595974 ACSF2Q96CM8 615 aaPredicted RBP17.53■□□□□ 0.4
TRIM28-206ENST00000595974 ZNF560Q96MR9 790 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 GOLPH3LQ9H4A5 285 aa17.53■□□□□ 0.4
TRIM28-206ENST00000595974 NOTCH4Q99466 2003 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 WDR27A2RRH5 827 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 ZNF233A6NK53 670 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 TGFB1I1O43294 461 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 XYLBO75191 536 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 ABLIM3O94929 683 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 OAZ2O95190 189 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 TAF6P49848 677 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 TFAMQ00059 246 aaKnown RBP17.52■□□□□ 0.4
TRIM28-206ENST00000595974 SURF1Q15526 300 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 KMT5BQ4FZB7 885 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 TPGS2Q68CL5 300 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 KRBA2Q6ZNG9 492 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 C12orf56Q8IXR9 622 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 CCDC34Q96HJ3 373 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 SENP8Q96LD8 212 aa17.52■□□□□ 0.4
TRIM28-206ENST00000595974 OR6C75A6NL08 312 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 SPTLC1O15269 473 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 GPR37L1O60883 481 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 ZNF202O95125 648 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 RPN1P04843 607 aaKnown RBP17.51■□□□□ 0.39
TRIM28-206ENST00000595974 ATF2P15336 505 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 ELF1P32519 619 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 PNPLA4P41247 253 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 PTPN21Q16825 1174 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 KNOP1Q1ED39 458 aaKnown RBP17.51■□□□□ 0.39
TRIM28-206ENST00000595974 SV2CQ496J9 727 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 TMEM31Q5JXX7 168 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 OVOS1Q6IE37 1185 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 CBWD2Q8IUF1 395 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 KIAA0895Q8NCT3 520 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 GOLGA5Q8TBA6 731 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 CCDC47Q96A33 483 aaKnown RBP17.51■□□□□ 0.39
TRIM28-206ENST00000595974 PDE11AQ9HCR9 933 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 ITGA11Q9UKX5 1188 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 DSEQ9UL01 958 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 MAFFQ9ULX9 164 aa17.51■□□□□ 0.39
TRIM28-206ENST00000595974 TIMM13Q9Y5L4 95 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-206ENST00000595974 GOLGA6L4A6NEF3 574 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 CYP11A1P05108 521 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 TMEM191BP0C7N4 346 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 CPB1P15086 417 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 ARPP19P56211 112 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 STK4Q13043 487 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 SNRNP35Q16560 246 aaKnown RBP17.5■□□□□ 0.39
TRIM28-206ENST00000595974 TCEAL8Q8IYN2 117 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 LRRC52Q8N7C0 313 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 C1orf127Q8N9H9 656 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 XXYLT1Q8NBI6 393 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 EDAQ92838 391 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 ANKRD36BP1Q96IX9 119 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 C11orf16Q9NQ32 467 aa17.5■□□□□ 0.39
TRIM28-206ENST00000595974 AFF4Q9UHB7 1163 aaKnown RBP17.5■□□□□ 0.39
TRIM28-206ENST00000595974 CIZ1Q9ULV3 898 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-206ENST00000595974 PRRG1O14668 218 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 CLIC2O15247 247 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 CCL16O15467 120 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 RHOBTB3O94955 611 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 ITGB3P05106 788 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 PRR29P0C7W0 189 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 POLR2BP30876 1174 aaKnown RBP17.49■□□□□ 0.39
TRIM28-206ENST00000595974 CYP2J2P51589 502 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 DPYDQ12882 1025 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 MYBPC2Q14324 1141 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 MTMR12Q9C0I1 747 aa17.49■□□□□ 0.39
TRIM28-206ENST00000595974 INTS13Q9NVM9 706 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms