RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 MAFFQ9ULX9 164 aa16.54■□□□□ 0.24
TRIM28-203ENST00000593582 TIMM13Q9Y5L4 95 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-203ENST00000593582 ZFP37Q9Y6Q3 630 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-203ENST00000593582 PDCD11Q14690 1871 aaKnown RBP16.54■□□□□ 0.24
TRIM28-203ENST00000593582 ANO9A1A5B4 782 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 ARHGEF37A1IGU5 675 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 PIRO00625 290 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 PPEF2O14830 753 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 LRG1P02750 347 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 ODC1P11926 461 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 CPB1P15086 417 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 KRT85P78386 507 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 NTHL1P78549 312 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 TCEAL8Q8IYN2 117 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 NOC3LQ8WTT2 800 aaKnown RBP16.53■□□□□ 0.24
TRIM28-203ENST00000593582 HPS3Q969F9 1004 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 NXPE3Q969Y0 559 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 CBWD1Q9BRT8 395 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 SMOC2Q9H3U7 446 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 RBAKQ9NYW8 714 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-203ENST00000593582 ATP6V1DQ9Y5K8 247 aa16.53■□□□□ 0.24
TRIM28-203ENST00000593582 KIAA0391O15091 583 aaKnown RBP16.52■□□□□ 0.24
TRIM28-203ENST00000593582 EIF3DO15371 548 aaKnown RBP eCLIP16.52■□□□□ 0.24
TRIM28-203ENST00000593582 EXTL3O43909 919 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 TYMPP19971 482 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 ADCY1Q08828 1119 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 PABPC1LQ4VXU2 614 aaKnown RBP16.52■□□□□ 0.24
TRIM28-203ENST00000593582 FAM26FQ5R3K3 315 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 OVOS1Q6IE37 1185 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 ARMCX5Q6P1M9 558 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 BRSK2Q8IWQ3 736 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 CEP57L1Q8IYX8 460 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 GLIS3Q8NEA6 775 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 SENP8Q96LD8 212 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 SPATA32Q96LK8 384 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 KCNH6Q9H252 994 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 PCIF1Q9H4Z3 704 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 HCFC1R1Q9NWW0 138 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 AFF4Q9UHB7 1163 aaKnown RBP16.52■□□□□ 0.24
TRIM28-203ENST00000593582 CDH7Q9ULB5 785 aa16.52■□□□□ 0.24
TRIM28-203ENST00000593582 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-203ENST00000593582 GOLGA8IPA6NC78 632 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 OR6C75A6NL08 312 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 GOLGA8JA6NMD2 632 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 SPTLC1O15269 473 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 AFMP43652 599 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 TAF6P49848 677 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 TFAMQ00059 246 aaKnown RBP16.51■□□□□ 0.23
TRIM28-203ENST00000593582 BECN1Q14457 450 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 UNC13DQ70J99 1090 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 EFCAB13Q8IY85 973 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 GPD1LQ8N335 351 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 ZSWIM2Q8NEG5 633 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 CACTINQ8WUQ7 758 aaKnown RBP16.51■□□□□ 0.23
TRIM28-203ENST00000593582 LEO1Q8WVC0 666 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-203ENST00000593582 RSAD2Q8WXG1 361 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 FAM122AQ96E09 287 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 BLZF1Q9H2G9 400 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 DNMT3BQ9UBC3 853 aaKnown RBP16.51■□□□□ 0.23
TRIM28-203ENST00000593582 DSEQ9UL01 958 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 DUSP12Q9UNI6 340 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 ZDHHC9Q9Y397 364 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 INSL5Q9Y5Q6 135 aa16.51■□□□□ 0.23
TRIM28-203ENST00000593582 SEC24AO95486 1093 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 SLFN14P0C7P3 912 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 PTPN2P17706 415 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 CMA1P23946 247 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 RNF19BQ6ZMZ0 732 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 EPM2AIP1Q7L775 607 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-203ENST00000593582 ELMOD1Q8N336 334 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 ITFG1Q8TB96 612 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 FGF13Q92913 245 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 FBXL21Q9UKT6 434 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 MRPS23Q9Y3D9 190 aaKnown RBP16.5■□□□□ 0.23
TRIM28-203ENST00000593582 MYO10Q9HD67 2058 aa16.5■□□□□ 0.23
TRIM28-203ENST00000593582 UBE4BO95155 1302 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 PVALEFA0A1B0GWK0 134 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 ANHXE9PGG2 379 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 CYB561D2O14569 222 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 PDGFBP01127 241 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-203ENST00000593582 RHOP08100 348 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 CASP1P29466 404 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 HOXD13P35453 343 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 PLA2G5P39877 138 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 PNPLA4P41247 253 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 EHHADHQ08426 723 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 GPR17Q13304 367 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 CUL4BQ13620 913 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 HTR4Q13639 388 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 MYBPC2Q14324 1141 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 SV2CQ496J9 727 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 IQCEQ6IPM2 695 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 MTSS1LQ765P7 747 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 METTL23Q86XA0 190 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 SLC44A3Q8N4M1 653 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 ZNF507Q8TCN5 953 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 ZNF512Q96ME7 567 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-203ENST00000593582 ZNF560Q96MR9 790 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 CORO1BQ9BR76 489 aa16.49■□□□□ 0.23
TRIM28-203ENST00000593582 MFSD1Q9H3U5 465 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms