RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 KPNA7A9QM74 516 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 SPTLC1O15269 473 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 SLC34A2O95436 690 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 PPM1AP35813 382 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 SMAD3P84022 425 aaKnown RBP16.31■□□□□ 0.2
ATG4D-211ENST00000589753 LRMPQ12912 555 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 GSE1Q14687 1217 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 SYCP1Q15431 976 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 WDR72Q3MJ13 1102 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 ZNF667Q5HYK9 610 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 PRPF38BQ5VTL8 546 aaKnown RBP16.31■□□□□ 0.2
ATG4D-211ENST00000589753 SPOPLQ6IQ16 392 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 ELMO3Q96BJ8 720 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 IGSF21Q96ID5 467 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 PCMTD1Q96MG8 357 aaPredicted RBP16.31■□□□□ 0.2
ATG4D-211ENST00000589753 NT5C1BQ96P26 610 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 NKX2-4Q9H2Z4 354 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 GRPEL1Q9HAV7 217 aa16.31■□□□□ 0.2
ATG4D-211ENST00000589753 A0A1W2PQC6 194 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TRAPPC3O43617 180 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 ARHGEF15O94989 841 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 P4HA1P13674 534 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 CTNNB1P35222 781 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 BMPR1AP36894 532 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 BRCC3P46736 316 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 AARSP49588 968 aaKnown RBP eCLIP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TNNC1P63316 161 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TAP1Q03518 808 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TIGD5Q53EQ6 642 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 DSTYKQ6XUX3 929 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TMEM173Q86WV6 379 aaPredicted RBP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 BCL7CQ8WUZ0 217 aaPredicted RBP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TMEM169Q96HH4 297 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 SAMD11Q96NU1 681 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 TGS1Q96RS0 853 aaKnown RBP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 LSM14BQ9BX40 385 aaKnown RBP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 APOBEC3GQ9HC16 384 aaKnown RBP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 GDAP2Q9NXN4 497 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 NXF1Q9UBU9 619 aaKnown RBP16.3■□□□□ 0.2
ATG4D-211ENST00000589753 SIK3Q9Y2K2 1263 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 SNX9Q9Y5X1 595 aa16.3■□□□□ 0.2
ATG4D-211ENST00000589753 PDE4DIPQ5VU43 2346 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 SF3B1O75533 1304 aaKnown RBP eCLIP16.29■□□□□ 0.22e-6■■■■■ 122.8
ATG4D-211ENST00000589753 I3L4J1 428 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 CYB561D2O14569 222 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 KLK7P49862 253 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 APBA1Q02410 837 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 ELAVL2Q12926 359 aaKnown RBP16.29■□□□□ 0.2
ATG4D-211ENST00000589753 PTPN21Q16825 1174 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 LRIT3Q3SXY7 679 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 FUT10Q6P4F1 479 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 TATDN2Q93075 761 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 FAXDC2Q96IV6 333 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 SUSD3Q96L08 255 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 SENP8Q96LD8 212 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 C17orf80Q9BSJ5 609 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 PLVAPQ9BX97 442 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 NIF3L1Q9GZT8 377 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 SIX2Q9NPC8 291 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 PLCB1Q9NQ66 1216 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 APEX2Q9UBZ4 518 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 POLIQ9UNA4 740 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 CEP290O15078 2479 aa16.29■□□□□ 0.2
ATG4D-211ENST00000589753 SCN1AP35498 2009 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 ARHGEF37A1IGU5 675 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 M0QZQ0 153 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 HUS1O60921 280 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 FGF18O76093 207 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 ODC1P11926 461 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 DNAJB2P25686 324 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 PBX1P40424 430 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 ZNF75DP51815 510 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 ERVK-21P61565 698 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 PLCB3Q01970 1234 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 KRT17Q04695 432 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 KLHDC7AQ5VTJ3 777 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 PPP2R2DQ66LE6 453 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 PHLDB3Q6NSJ2 640 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 ARHGEF19Q8IW93 802 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 PPM1KQ8N3J5 372 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 KLHL23Q8NBE8 558 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 APPL2Q8NEU8 664 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 NEK11Q8NG66 645 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 MMS19Q96T76 1030 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 GPR62Q9BZJ7 368 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 SLC28A3Q9HAS3 691 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 FAM207AQ9NSI2 230 aaPredicted RBP16.28■□□□□ 0.2
ATG4D-211ENST00000589753 MTUS1Q9ULD2 1270 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 NLRC5Q86WI3 1866 aa16.28■□□□□ 0.2
ATG4D-211ENST00000589753 C5orf67F2Z3F1 127 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 EFEMP2O95967 443 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 RB1P06400 928 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 TBXAS1P24557 533 aaPredicted RBP16.27■□□□□ 0.2
ATG4D-211ENST00000589753 ASPAP45381 313 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 MRE11P49959 708 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 GCNT1Q02742 428 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 CUL2Q13617 745 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 FAM171A1Q5VUB5 890 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 DPY19L2P1Q6NXN4 242 aa16.27■□□□□ 0.2
ATG4D-211ENST00000589753 SCARA5Q6ZMJ2 495 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms