RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CSTF1Q05048 431 aaKnown RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 TWF1Q12792 350 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 PUM1Q14671 1186 aaKnown RBP eCLIP12.94□□□□□ -0.34
LIG3-209ENST00000586435 KYAT1Q16773 422 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 ARL6IP4Q66PJ3 421 aaKnown RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 MAP4K3Q8IVH8 894 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 GPR161Q8N6U8 529 aaKnown RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 ATRIPQ8WXE1 791 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 ZNF512Q96ME7 567 aaPredicted RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 TSPAN18Q96SJ8 248 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 TRMT61BQ9BVS5 477 aaKnown RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 CHRDQ9H2X0 955 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 BRD9Q9H8M2 597 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 ASAH2Q9NR71 780 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 DLL3Q9NYJ7 618 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 CEP72Q9P209 647 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 LARSQ9P2J5 1176 aaKnown RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 UBQLN1Q9UMX0 589 aaKnown RBP12.94□□□□□ -0.34
LIG3-209ENST00000586435 NRG2O14511 850 aaPredicted RBP12.93□□□□□ -0.34
LIG3-209ENST00000586435 XPOTO43592 962 aaKnown RBP12.93□□□□□ -0.34
LIG3-209ENST00000586435 CPB1P15086 417 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 MARCKSP29966 332 aaPredicted RBP12.93□□□□□ -0.34
LIG3-209ENST00000586435 MLLT6P55198 1093 aaPredicted RBP12.93□□□□□ -0.34
LIG3-209ENST00000586435 PLD1Q13393 1074 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 GRM2Q14416 872 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 ZBTB6Q15916 424 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 TMEM119Q4V9L6 283 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 SEZ6Q53EL9 994 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 VITQ6UXI7 678 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 RNF19BQ6ZMZ0 732 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 DGLUCYQ7Z3D6 616 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 DCLK2Q8N568 766 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 E2F7Q96AV8 911 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 GPR88Q9GZN0 384 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 HAPLN2Q9GZV7 340 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 ZNF334Q9HCZ1 680 aaPredicted RBP12.93□□□□□ -0.34
LIG3-209ENST00000586435 ODF2LQ9ULJ1 636 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 YIPF1Q9Y548 306 aa12.93□□□□□ -0.34
LIG3-209ENST00000586435 TCHHQ07283 1943 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 DENND4CQ5VZ89 1909 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 OR6C75A6NL08 312 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 FAM189A1O60320 539 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 VNN2O95498 520 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 PIGRP01833 764 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 ADRB2P07550 413 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 PLA2G4BP0C869 781 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 TYMPP19971 482 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 SCN1AP35498 2009 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 PPP2R3AQ06190 1150 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 RAD51AP2Q09MP3 1159 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 MTAPQ13126 283 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 C1orf228Q6PIY5 440 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 MFSD6LQ8IWD5 586 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 HS6ST3Q8IZP7 471 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 ZSCAN18Q8TBC5 510 aaPredicted RBP12.92□□□□□ -0.34
LIG3-209ENST00000586435 KIF12Q96FN5 646 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 MSANTD3Q96H12 275 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 CDK5RAP3Q96JB5 506 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 AK8Q96MA6 479 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 ZSWIM3Q96MP5 696 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 LRRC3Q9BY71 257 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 NCDNQ9UBB6 729 aa12.92□□□□□ -0.34
LIG3-209ENST00000586435 KIF26AQ9ULI4 1882 aaPredicted RBP12.92□□□□□ -0.34
LIG3-209ENST00000586435 SMG5Q9UPR3 1016 aaKnown RBP12.92□□□□□ -0.34
LIG3-209ENST00000586435 VWA3AA6NCI4 1184 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 ARNTLO00327 626 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 MYL4P12829 197 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 TDGF1P13385 188 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 PAX3P23760 479 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 GDI1P31150 447 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 MATR3P43243 847 aaKnown RBP eCLIP12.91□□□□□ -0.34
LIG3-209ENST00000586435 GPR17Q13304 367 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 MYBPC2Q14324 1141 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 ZRSR1Q15695 479 aaKnown RBP12.91□□□□□ -0.34
LIG3-209ENST00000586435 ARSHQ5FYA8 562 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 HAUS6Q7Z4H7 955 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 USP37Q86T82 979 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 TMC8Q8IU68 726 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 SHKBP1Q8TBC3 707 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 FAM3CQ92520 227 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 SECISBP2LQ93073 1101 aaKnown RBP12.91□□□□□ -0.34
LIG3-209ENST00000586435 BICD1Q96G01 975 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 HSFX1Q9UBD0 423 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 PIAS3Q9Y6X2 628 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 NCOR2Q9Y618 2525 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 FRYLO94915 3013 aa12.91□□□□□ -0.34
LIG3-209ENST00000586435 NCANO14594 1321 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 MED19A0JLT2 244 aaPredicted RBP12.9□□□□□ -0.34
LIG3-209ENST00000586435 ZNF263O14978 683 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 HNRNPDLO14979 420 aaKnown RBP12.9□□□□□ -0.34
LIG3-209ENST00000586435 OGTO15294 1046 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 GJA1P17302 382 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 SDHBP21912 280 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 ABCD1P33897 745 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 TNFSF9P41273 254 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 VIPR2P41587 438 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 LIG4P49917 911 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 CCR3P51677 355 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 ZNF131P52739 623 aa12.9□□□□□ -0.34
LIG3-209ENST00000586435 NRLP54845 237 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms