RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 PCDH10Q9P2E7 1040 aa17.33■□□□□ 0.36
SS18-226ENST00000585241 R3HCC1Q9Y3T6 440 aaKnown RBP17.33■□□□□ 0.36
SS18-226ENST00000585241 PTPRSQ13332 1948 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 LRRC53A6NM62 1247 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 TMEM189-UBE2V1I3L0A0 370 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 PODXLO00592 558 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 B4GALT3O60512 393 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 DEKP35659 375 aaKnown RBP17.32■□□□□ 0.36
SS18-226ENST00000585241 TAF6P49848 677 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 GATMP50440 423 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 GOLGA8FQ08AF8 430 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 GOLGA8DPQ0D2H9 430 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 RAPGEF1Q13905 1077 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 DRAP1Q14919 205 aaPredicted RBP17.32■□□□□ 0.36
SS18-226ENST00000585241 E4F1Q66K89 784 aaPredicted RBP17.32■□□□□ 0.36
SS18-226ENST00000585241 LIMS2Q7Z4I7 341 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 FMNL3Q8IVF7 1028 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 DPF3Q92784 378 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 ELMO3Q96BJ8 720 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 SPAG5Q96R06 1193 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.32■□□□□ 0.36
SS18-226ENST00000585241 CYP3A43Q9HB55 503 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 AIPL1Q9NZN9 384 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 CNTN6Q9UQ52 1028 aa17.32■□□□□ 0.36
SS18-226ENST00000585241 CASTOR2A6NHX0 329 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 DDHD2O94830 711 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 PTMAP06454 111 aaKnown RBP17.31■□□□□ 0.36
SS18-226ENST00000585241 P4HA1P13674 534 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 ACO1P21399 889 aaKnown RBP17.31■□□□□ 0.36
SS18-226ENST00000585241 SOX5P35711 763 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 STAT1P42224 750 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 KCNJ6P48051 423 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 CLCNKBP51801 687 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 LILRA4P59901 499 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 CDK17Q00537 523 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 WDR72Q3MJ13 1102 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 SV2CQ496J9 727 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 RASIP1Q5U651 963 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 CD300LGQ6UXG3 332 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 OTOP2Q7RTS6 562 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 ZNF280BQ86YH2 543 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 LRRC8AQ8IWT6 810 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 FAM71AQ8IYT1 594 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 LRRC43Q8N309 656 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 ARID3AQ99856 593 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 TMEM175Q9BSA9 504 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.31■□□□□ 0.363e-16■■■■■ 317.3
SS18-226ENST00000585241 NR2E3Q9Y5X4 410 aa17.31■□□□□ 0.36
SS18-226ENST00000585241 TBKBP1A7MCY6 615 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 SPTLC1O15269 473 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 FAM163BP0C2L3 166 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 PRKCIP41743 596 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 ARHGAP44Q17R89 818 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 SFMBT2Q5VUG0 894 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 WDR59Q6PJI9 974 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 DCLRE1AQ6PJP8 1040 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 TMEM139Q8IV31 216 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 CMTR2Q8IYT2 770 aaKnown RBP17.3■□□□□ 0.36
SS18-226ENST00000585241 C3orf58Q8NDZ4 430 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 LBHD1Q9BQE6 289 aaPredicted RBP17.3■□□□□ 0.36
SS18-226ENST00000585241 PAAF1Q9BRP4 392 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 NRDE2Q9H7Z3 1164 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 POLIQ9UNA4 740 aa17.3■□□□□ 0.36
SS18-226ENST00000585241 KPNA7A9QM74 516 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 FOXN3O00409 490 aaPredicted RBP17.29■□□□□ 0.36
SS18-226ENST00000585241 FERP16591 822 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 ZNF132P52740 706 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 YWHAEP62258 255 aaKnown RBP17.29■□□□□ 0.36
SS18-226ENST00000585241 TNNC1P63316 161 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 RNASELQ05823 741 aaKnown RBP17.29■□□□□ 0.36
SS18-226ENST00000585241 INCA1Q0VD86 236 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 HS1BP3Q53T59 392 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 DPH6Q7L8W6 267 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 IRF2BP2Q7Z5L9 587 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 TTC39CQ8N584 583 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 CCDC112Q8NEF3 446 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 PHOSPHO2Q8TCD6 241 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 SLC9A7Q96T83 725 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 SDCBP2Q9H190 292 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 CACNG4Q9UBN1 327 aa17.29■□□□□ 0.36
SS18-226ENST00000585241 NXF1Q9UBU9 619 aaKnown RBP17.29■□□□□ 0.36
SS18-226ENST00000585241 TACC1O75410 805 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 UPP2O95045 317 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 GJB5O95377 273 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 HTRA4P83105 476 aaPredicted RBP17.28■□□□□ 0.36
SS18-226ENST00000585241 CCZ1BP86790 482 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 CCZ1P86791 482 aaPredicted RBP17.28■□□□□ 0.36
SS18-226ENST00000585241 HGSNATQ68CP4 663 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 TOP6BLQ8N6T0 577 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 SPATA18Q8TC71 538 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 FAM193BQ96PV7 902 aaPredicted RBP17.28■□□□□ 0.36
SS18-226ENST00000585241 KCNF1Q9H3M0 494 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 CWH43Q9H720 699 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 SMYD3Q9H7B4 428 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 CISHQ9NSE2 258 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 CXXC1Q9P0U4 656 aaPredicted RBP17.28■□□□□ 0.36
SS18-226ENST00000585241 DNAJB4Q9UDY4 337 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 SNX9Q9Y5X1 595 aa17.28■□□□□ 0.36
SS18-226ENST00000585241 ZBBXA8MT70 800 aa17.27■□□□□ 0.36
SS18-226ENST00000585241 CCDC172P0C7W6 258 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms