RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNHIT6Q9NWK9 470 aaKnown RBP26.93■■□□□ 1.9
SHMT1-207ENST00000580002 MYO6Q9UM54 1294 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 ZKSCAN5Q9Y2L8 839 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 TTC3P53804 2025 aa26.93■■□□□ 1.9
SHMT1-207ENST00000580002 RFX1P22670 979 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 LRPAP1P30533 357 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 ATICP31939 592 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 RFC2P35250 354 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 IKBKEQ14164 716 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 CYP26C1Q6V0L0 522 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 ZNF571Q7Z3V5 609 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-207ENST00000580002 DESI2Q9BSY9 194 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 KRT5P13647 590 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 EPHB4P54760 987 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 NOMO2Q5JPE7 1267 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 GLB1LQ6UWU2 654 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 TMEM199Q8N511 208 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 OLIG1Q8TAK6 271 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 CASD1Q96PB1 797 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 TSPAN18Q96SJ8 248 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 ELAC1Q9H777 363 aaKnown RBP26.92■■□□□ 1.9
SHMT1-207ENST00000580002 VRTNQ9H8Y1 702 aa26.92■■□□□ 1.9
SHMT1-207ENST00000580002 R3HCC1Q9Y3T6 440 aaKnown RBP26.92■■□□□ 1.9
SHMT1-207ENST00000580002 INPPL1O15357 1258 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 PTK2Q05397 1052 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 KLHL30Q0D2K2 578 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 SLC47A2Q86VL8 602 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 TMTC1Q8IUR5 882 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 CCDC112Q8NEF3 446 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 TAF4BQ92750 862 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 NUCKS1Q9H1E3 243 aaKnown RBP26.91■■□□□ 1.9
SHMT1-207ENST00000580002 SPTLC3Q9NUV7 552 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 PCDHB4Q9Y5E5 795 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 SNX9Q9Y5X1 595 aa26.91■■□□□ 1.9
SHMT1-207ENST00000580002 A0A0U1RQJ8 604 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 XPOTO43592 962 aaKnown RBP26.9■■□□□ 1.9
SHMT1-207ENST00000580002 SERPING1P05155 500 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 DEFB103AP81534 67 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 ORC1Q13415 861 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 PAN2Q504Q3 1202 aaKnown RBP26.9■■□□□ 1.9
SHMT1-207ENST00000580002 ZNF394Q53GI3 561 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 TDRD12Q587J7 1177 aaKnown RBP26.9■■□□□ 1.9
SHMT1-207ENST00000580002 OTOP2Q7RTS6 562 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 SLC20A1Q8WUM9 679 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 ATRIPQ8WXE1 791 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 BCO2Q9BYV7 579 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 CISHQ9NSE2 258 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 SLC38A7Q9NVC3 462 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 TBC1D13Q9NVG8 400 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 LRFN2Q9ULH4 789 aa26.9■■□□□ 1.9
SHMT1-207ENST00000580002 ZMYND8Q9ULU4 1186 aaPredicted RBP26.9■■□□□ 1.9
SHMT1-207ENST00000580002 CCDC85CA6NKD9 419 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 PODXLO00592 558 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 GRIK3Q13003 919 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 TMEM270Q6UE05 265 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 CD300LGQ6UXG3 332 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 DNAAF5Q86Y56 855 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 LRRC52Q8N7C0 313 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 MMS19Q96T76 1030 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 DNAJB4Q9UDY4 337 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 HMGXB4Q9UGU5 601 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 MICAL3Q7RTP6 2002 aa26.89■■□□□ 1.9
SHMT1-207ENST00000580002 STAU1O95793 577 aaKnown RBP26.89■■□□□ 1.89
SHMT1-207ENST00000580002 FERP16591 822 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 TBXAS1P24557 533 aaPredicted RBP26.89■■□□□ 1.89
SHMT1-207ENST00000580002 LILRA4P59901 499 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 CDK17Q00537 523 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 UPP1Q16831 310 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 ASTE1Q2TB18 679 aaPredicted RBP26.89■■□□□ 1.89
SHMT1-207ENST00000580002 FAM117BQ6P1L5 589 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 ENOSF1Q7L5Y1 443 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 ACRBPQ8NEB7 543 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 HASPINQ8TF76 798 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 DAAM1Q9Y4D1 1078 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 NME7Q9Y5B8 376 aa26.89■■□□□ 1.89
SHMT1-207ENST00000580002 ZNF263O14978 683 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 ARHGAP6O43182 974 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 HCRTO43612 131 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 ITGB1P05556 798 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 MYO1EQ12965 1108 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 TWNKQ96RR1 684 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 MRPL45Q9BRJ2 306 aaKnown RBP26.88■■□□□ 1.89
SHMT1-207ENST00000580002 IL23AQ9NPF7 189 aa26.88■■□□□ 1.89
SHMT1-207ENST00000580002 USP27XA6NNY8 438 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 KPNA7A9QM74 516 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 SSTR3P32745 418 aaPredicted RBP26.87■■□□□ 1.89
SHMT1-207ENST00000580002 PRKCIP41743 596 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 TUSC3Q13454 348 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 NOP9Q86U38 636 aaKnown RBP26.87■■□□□ 1.89
SHMT1-207ENST00000580002 KIAA1524Q8TCG1 905 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 WHAMMQ8TF30 809 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 PRKAG2Q9UGJ0 569 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 TFR2Q9UP52 801 aa26.87■■□□□ 1.89
SHMT1-207ENST00000580002 REXO2Q9Y3B8 237 aaKnown RBP26.87■■□□□ 1.89
SHMT1-207ENST00000580002 I3L4J1 428 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 TAF6P49848 677 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 TNNC1P63316 161 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 CYP27A1Q02318 531 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 SOWAHAQ2M3V2 549 aa26.86■■□□□ 1.89
SHMT1-207ENST00000580002 TAF3Q5VWG9 929 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms