RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CASTOR2A6NHX0 329 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 TMEM189-UBE2V1I3L0A0 370 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 STAT1P42224 750 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 CLCNKBP51801 687 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 JAM2P57087 298 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 RAPGEF1Q13905 1077 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 DRAP1Q14919 205 aaPredicted RBP11.52□□□□□ -0.57
SS18-213ENST00000579640 SPOPLQ6IQ16 392 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 PDXDC1Q6P996 788 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 GJB7Q6PEY0 223 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 DCLRE1AQ6PJP8 1040 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 RRAGAQ7L523 313 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 CMTR2Q8IYT2 770 aaKnown RBP11.52□□□□□ -0.57
SS18-213ENST00000579640 TC2NQ8N9U0 490 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 OR8K1Q8NGG5 319 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 ZNF689Q96CS4 500 aaPredicted RBP11.52□□□□□ -0.57
SS18-213ENST00000579640 PANX2Q96RD6 677 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 DNAJC7Q99615 494 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 RC3H2Q9HBD1 1191 aaKnown RBP11.52□□□□□ -0.57
SS18-213ENST00000579640 GDAP2Q9NXN4 497 aa11.52□□□□□ -0.57
SS18-213ENST00000579640 ARHGEF37A1IGU5 675 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 KPNA7A9QM74 516 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 F8VZ95 297 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 PPEF2O14830 753 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 DDHD2O94830 711 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 FAM163BP0C2L3 166 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 CCDC172P0C7W6 258 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 ASPAP45381 313 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 GATMP50440 423 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 ADKP55263 362 aaKnown RBP11.51□□□□□ -0.57
SS18-213ENST00000579640 LILRA4P59901 499 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 ARHGAP44Q17R89 818 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 SCARA3Q6AZY7 606 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 DPH6Q7L8W6 267 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 ZNF280BQ86YH2 543 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 SHC3Q92529 594 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 KREMEN1Q96MU8 473 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 BCO2Q9BYV7 579 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 NRDE2Q9H7Z3 1164 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.51□□□□□ -0.572e-7■■■■■ 220.9
SS18-213ENST00000579640 ABHD10Q9NUJ1 306 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 ZNHIT6Q9NWK9 470 aaKnown RBP11.51□□□□□ -0.57
SS18-213ENST00000579640 NXF1Q9UBU9 619 aaKnown RBP11.51□□□□□ -0.57
SS18-213ENST00000579640 SLC4A7Q9Y6M7 1214 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 SCN1AP35498 2009 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 LRRC53A6NM62 1247 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 RNF225M0QZC1 329 aaPredicted RBP11.51□□□□□ -0.57
SS18-213ENST00000579640 NRDCO43847 1150 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 B3GAT3O94766 335 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 GJB5O95377 273 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 HNRNPH3P31942 346 aaKnown RBP11.51□□□□□ -0.57
SS18-213ENST00000579640 SOX5P35711 763 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 AARSP49588 968 aaKnown RBP eCLIP11.51□□□□□ -0.57
SS18-213ENST00000579640 RASIP1Q5U651 963 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 SFMBT2Q5VUG0 894 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 TMEM130Q8N3G9 435 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 KAT5Q92993 513 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 COLEC11Q9BWP8 271 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 AIPL1Q9NZN9 384 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 AJAP1Q9UKB5 411 aaPredicted RBP11.51□□□□□ -0.57
SS18-213ENST00000579640 SNX9Q9Y5X1 595 aa11.51□□□□□ -0.57
SS18-213ENST00000579640 PDE4DIPQ5VU43 2346 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 ALDH2P05091 517 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 FERP16591 822 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 MAGEA10P43363 369 aaPredicted RBP11.5□□□□□ -0.57
SS18-213ENST00000579640 OR1G1P47890 313 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 HTRA4P83105 476 aaPredicted RBP11.5□□□□□ -0.57
SS18-213ENST00000579640 PAN2Q504Q3 1202 aaKnown RBP11.5□□□□□ -0.57
SS18-213ENST00000579640 TOP6BLQ8N6T0 577 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 UBR7Q8N806 425 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 CCDC112Q8NEF3 446 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 SPATA18Q8TC71 538 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 MMS19Q96T76 1030 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 YME1L1Q96TA2 773 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 GPR88Q9GZN0 384 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 CXXC1Q9P0U4 656 aaPredicted RBP11.5□□□□□ -0.57
SS18-213ENST00000579640 POLIQ9UNA4 740 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 CNTN6Q9UQ52 1028 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 PTPRSQ13332 1948 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 COL4A6Q14031 1691 aa11.5□□□□□ -0.57
SS18-213ENST00000579640 FOXN3O00409 490 aaPredicted RBP11.49□□□□□ -0.57
SS18-213ENST00000579640 SPTLC1O15269 473 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 TRAPPC3O43617 180 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 HUS1O60921 280 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 TACC1O75410 805 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 ATP2A2P16615 1042 aaKnown RBP11.49□□□□□ -0.57
SS18-213ENST00000579640 ACO1P21399 889 aaKnown RBP11.49□□□□□ -0.57
SS18-213ENST00000579640 CDK17Q00537 523 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 BTG3Q14201 252 aaPredicted RBP11.49□□□□□ -0.57
SS18-213ENST00000579640 ASIC2Q16515 512 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 FAM117BQ6P1L5 589 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 DSTYKQ6XUX3 929 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 SCARA5Q6ZMJ2 495 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 LIMS2Q7Z4I7 341 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 HERC6Q8IVU3 1022 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 LRRC8AQ8IWT6 810 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 FAM71AQ8IYT1 594 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 TMEM86AQ8N2M4 240 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 APPL2Q8NEU8 664 aa11.49□□□□□ -0.57
SS18-213ENST00000579640 ELMO3Q96BJ8 720 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms