RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 LUZP1Q86V48 1076 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 FAM200AQ8TCP9 573 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TAS1R2Q8TE23 839 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 POF1BQ8WVV4 589 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 ELMO3Q96BJ8 720 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TMEM169Q96HH4 297 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 C11orf84Q9BUA3 381 aaPredicted RBP9.23□□□□□ -0.93
NUP88-211ENST00000575976 VN1R3Q9BXE9 311 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TAB2Q9NYJ8 693 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 R3HCC1Q9Y3T6 440 aaKnown RBP9.23□□□□□ -0.93
NUP88-211ENST00000575976 NUB1Q9Y5A7 615 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 KIAA1671Q9BY89 1806 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 LRRN2O75325 713 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 HLA-DRAP01903 254 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 AFPP02771 609 aaKnown RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 ATP1A3P13637 1013 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 CDK11BP21127 795 aaKnown RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 DNAJB1P25685 340 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 EEF1GP26641 437 aaKnown RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 PIK3CAP42336 1068 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 FMO5P49326 533 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 AARSP49588 968 aaKnown RBP eCLIP9.22□□□□□ -0.93
NUP88-211ENST00000575976 TAF6P49848 677 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 MXI1P50539 228 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 LILRA4P59901 499 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 MYL6P60660 151 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 CAMK1Q14012 370 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 GRIN2CQ14957 1233 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 KRT31Q15323 416 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 MAN2A1Q16706 1144 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 VWA3BQ502W6 1294 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 DSTYKQ6XUX3 929 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 DDX53Q86TM3 631 aaKnown RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 RNF168Q8IYW5 571 aaPredicted RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 VPS52Q8N1B4 723 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 LRRC52Q8N7C0 313 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 RNF214Q8ND24 703 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 GDPD5Q8WTR4 605 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 SEMA4DQ92854 862 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 HPDLQ96IR7 371 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 TUBGCP2Q9BSJ2 902 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 HERC2P3Q9BVR0 1158 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 VPS16Q9H269 839 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 PRDM12Q9H4Q4 367 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.22□□□□□ -0.93
NUP88-211ENST00000575976 RAB20Q9NX57 234 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 LIMA1Q9UHB6 759 aaKnown RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 PUF60Q9UHX1 559 aaKnown RBP9.22□□□□□ -0.93
NUP88-211ENST00000575976 HCN4Q9Y3Q4 1203 aa9.22□□□□□ -0.93
NUP88-211ENST00000575976 KPNA7A9QM74 516 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 GOLGA6L19H0YKK7 550 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 CYB561D2O14569 222 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 TRAPPC3O43617 180 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 LPXNO60711 386 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 CSPG5O95196 566 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 STAU1O95793 577 aaKnown RBP9.21□□□□□ -0.94
NUP88-211ENST00000575976 SOD2P04179 222 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 PAX3P23760 479 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 TKTP29401 623 aaKnown RBP9.21□□□□□ -0.94
NUP88-211ENST00000575976 ATICP31939 592 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 IRS1P35568 1242 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 PNPLA4P41247 253 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 COPB1P53618 953 aaKnown RBP9.21□□□□□ -0.94
NUP88-211ENST00000575976 ERVFC1P60507 584 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 MYL7Q01449 175 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 UBE3AQ05086 875 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 ELAVL2Q12926 359 aaKnown RBP9.21□□□□□ -0.94
NUP88-211ENST00000575976 SGSM1Q2NKQ1 1148 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 SV2CQ496J9 727 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 MIIPQ5JXC2 388 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 FAM171A1Q5VUB5 890 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 SPOPLQ6IQ16 392 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 APTXQ7Z2E3 356 aaKnown RBP9.21□□□□□ -0.94
NUP88-211ENST00000575976 GAS2L3Q86XJ1 694 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 CEP57Q86XR8 500 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 FBXL13Q8NEE6 735 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 SUSD3Q96L08 255 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 B3GALT6Q96L58 329 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 SENP8Q96LD8 212 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 ZNF560Q96MR9 790 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 PI4K2AQ9BTU6 479 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 ZBP1Q9H171 429 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 XYLT2Q9H1B5 865 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 NDST4Q9H3R1 872 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 CHST7Q9NS84 486 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 LZTS1Q9Y250 596 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 COQ4Q9Y3A0 265 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 TIMM13Q9Y5L4 95 aaPredicted RBP9.21□□□□□ -0.94
NUP88-211ENST00000575976 SNX9Q9Y5X1 595 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 SF3B1O75533 1304 aaKnown RBP eCLIP9.21□□□□□ -0.94
NUP88-211ENST00000575976 NLRC5Q86WI3 1866 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 CDH23Q9H251 3354 aa9.21□□□□□ -0.94
NUP88-211ENST00000575976 LRRC10BA6NIK2 292 aa9.2□□□□□ -0.94
NUP88-211ENST00000575976 M0QZQ0 153 aa9.2□□□□□ -0.94
NUP88-211ENST00000575976 PES1O00541 588 aaKnown RBP9.2□□□□□ -0.94
NUP88-211ENST00000575976 FSCN2O14926 492 aa9.2□□□□□ -0.94
NUP88-211ENST00000575976 SYN3O14994 580 aa9.2□□□□□ -0.94
NUP88-211ENST00000575976 PMM2O15305 246 aa9.2□□□□□ -0.94
NUP88-211ENST00000575976 P4HA2O15460 535 aa9.2□□□□□ -0.94
NUP88-211ENST00000575976 N4BP1O75113 896 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms