RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PDE1AP54750 535 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 AMPD2Q01433 879 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 TWF1Q12792 350 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 RUNX3Q13761 415 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 STXBP5Q5T5C0 1151 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 ANO7Q6IWH7 933 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 PPP1R18Q6NYC8 613 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 MDGA1Q8NFP4 955 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 EZH1Q92800 747 aaPredicted RBP17.98■□□□□ 0.47
VPS53-218ENST00000575207 HPS4Q9NQG7 708 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 COL5A1P20908 1838 aaPredicted RBP17.98■□□□□ 0.47
VPS53-218ENST00000575207 MUC22E2RYF6 1773 aaPredicted RBP17.97■□□□□ 0.47
VPS53-218ENST00000575207 PRKCBP05771 671 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 THP07101 528 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 IGFBP6P24592 240 aaPredicted RBP17.97■□□□□ 0.47
VPS53-218ENST00000575207 MCM2P49736 904 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 NAPAP54920 295 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 PRR16Q569H4 304 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 CD300LGQ6UXG3 332 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 ANO5Q75V66 913 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 RABEPKQ7Z6M1 372 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 TMC8Q8IU68 726 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 RNF149Q8NC42 400 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 RDM1Q8NG50 284 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 LENG9Q96B70 501 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 GLT8D2Q9H1C3 349 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 THG1LQ9NWX6 298 aaKnown RBP17.97■□□□□ 0.47
VPS53-218ENST00000575207 TOR4AQ9NXH8 423 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 MAFFQ9ULX9 164 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 PTPRDP23468 1912 aa17.97■□□□□ 0.47
VPS53-218ENST00000575207 ASAP2O43150 1006 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 SYPP08247 313 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 C6P13671 934 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 ARF4P18085 180 aaPredicted RBP17.96■□□□□ 0.47
VPS53-218ENST00000575207 NBR1Q14596 966 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 AMHR2Q16671 573 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 TAF1BQ53T94 588 aaPredicted RBP17.96■□□□□ 0.47
VPS53-218ENST00000575207 CWC27Q6UX04 472 aaKnown RBP17.96■□□□□ 0.47
VPS53-218ENST00000575207 SLC7A3Q8WY07 619 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 RIT2Q99578 217 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 P2RY13Q9BPV8 354 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 SEMA4CQ9C0C4 833 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 GKN1Q9NS71 199 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 PCOLCE2Q9UKZ9 415 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 FLNCQ14315 2725 aa17.96■□□□□ 0.47
VPS53-218ENST00000575207 NUP210Q8TEM1 1887 aaPredicted RBP17.95■□□□□ 0.46
VPS53-218ENST00000575207 DDX11L8A8MPP1 907 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 RRP8O43159 456 aaKnown RBP17.95■□□□□ 0.46
VPS53-218ENST00000575207 TRAPPC3O43617 180 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 CHMP2AO43633 222 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 SLC28A2O43868 658 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 B3GAT3O94766 335 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 PRAMEF12O95522 483 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 CIITAP33076 1130 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 PTENP60484 403 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 LMBRD2Q68DH5 695 aaPredicted RBP17.95■□□□□ 0.46
VPS53-218ENST00000575207 SLC27A1Q6PCB7 646 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 CCDC82Q8N4S0 544 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 RLN3Q8WXF3 142 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 RILPL2Q969X0 211 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 TMEM143Q96AN5 459 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 UNC45AQ9H3U1 944 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 DHX33Q9H6R0 707 aaKnown RBP17.95■□□□□ 0.46
VPS53-218ENST00000575207 TBX20Q9UMR3 447 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 AHCTF1Q8WYP5 2266 aa17.95■□□□□ 0.46
VPS53-218ENST00000575207 LRRK2Q5S007 2527 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 SMCO2A6NFE2 343 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 NPTXRO95502 500 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 ANTXR2P58335 489 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 FERMT3Q86UX7 667 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 IFNLR1Q8IU57 520 aaPredicted RBP17.94■□□□□ 0.46
VPS53-218ENST00000575207 FMNL3Q8IVF7 1028 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 EXOC8Q8IYI6 725 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 EXOC4Q96A65 974 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 SPACA7Q96KW9 195 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 AFF4Q9UHB7 1163 aaKnown RBP17.94■□□□□ 0.46
VPS53-218ENST00000575207 IL17BQ9UHF5 180 aa17.94■□□□□ 0.46
VPS53-218ENST00000575207 A0A1B0GUA9 196 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 TLX3O43711 291 aaPredicted RBP17.93■□□□□ 0.46
VPS53-218ENST00000575207 ARPP19P56211 112 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 JAKMIP3Q5VZ66 844 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 FRMD1Q8N878 549 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 CCDC26Q8TAB7 109 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 SPATA18Q8TC71 538 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 POLR3CQ9BUI4 534 aaPredicted RBP17.93■□□□□ 0.46
VPS53-218ENST00000575207 EBF3Q9H4W6 596 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 NXF1Q9UBU9 619 aaKnown RBP17.93■□□□□ 0.46
VPS53-218ENST00000575207 KIAA1549LQ6ZVL6 1849 aa17.93■□□□□ 0.46
VPS53-218ENST00000575207 INO80B-WBP1J3KQ70 363 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 MSH4O15457 936 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 GAS7O60861 476 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 CALM1P0DP23 149 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 CALM2P0DP24 149 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 CALM3P0DP25 149 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 HLA-EP13747 358 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 IL12RB1P42701 662 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 MRPL58Q14197 206 aaKnown RBP17.92■□□□□ 0.46
VPS53-218ENST00000575207 PLA2G4FQ68DD2 849 aa17.92■□□□□ 0.46
VPS53-218ENST00000575207 NAIF1Q69YI7 327 aaPredicted RBP17.92■□□□□ 0.46
VPS53-218ENST00000575207 TMTC3Q6ZXV5 915 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms