RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	PRR33	A8MZF0	331 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665		H3BQ06	376 aa	Predicted RBP	10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	DDX39A	O00148	427 aa	Known RBP	10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	MAGEB2	O15479	319 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	SRGAP2B	P0DMP2	458 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	IL9	P15248	144 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	CCNF	P41002	786 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	SARS	P49591	514 aa	Known RBP	10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	UBE3A	Q05086	875 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	TMEM62	Q0P6H9	643 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	ITGB3BP	Q13352	177 aa	Predicted RBP	10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	SPOUT1	Q5T280	376 aa	Known RBP	10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	JAKMIP3	Q5VZ66	844 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	PAOX	Q6QHF9	649 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	ABHD15	Q6UXT9	468 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	CYP2W1	Q8TAV3	490 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	TP53INP1	Q96A56	240 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	PGBD1	Q96JS3	809 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	CCDC74B	Q96LY2	380 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	TCEANC2	Q96MN5	208 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	C1GALT1	Q9NS00	363 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	PLAGL2	Q9UPG8	496 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	GINS2	Q9Y248	185 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	PCDHA10	Q9Y5I2	948 aa		10.43	□□□□□ -0.74
CIITA-208	ENST00000572665	BRWD1	Q9NSI6	2320 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	KIAA1671	Q9BY89	1806 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	GRM6	O15303	877 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	PRPF3	O43395	683 aa	Known RBP	10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	UBOX5	O94941	541 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	ITGB2	P05107	769 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	CRYBB1	P53674	252 aa	Predicted RBP	10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	NFKBIB	Q15653	356 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	ADCK5	Q3MIX3	580 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	SWSAP1	Q6NVH7	229 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665		Q6ZUG5	572 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	SLC24A5	Q71RS6	500 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	ADHFE1	Q8IWW8	467 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	FBXL16	Q8N461	479 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	CELF2-AS1	Q8N7Q2	184 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	BAHD1	Q8TBE0	780 aa	Predicted RBP	10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	JAKMIP1	Q96N16	626 aa	Known RBP	10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	MAP7D2	Q96T17	732 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	RNF26	Q9BY78	433 aa	Predicted RBP	10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	RGS18	Q9NS28	235 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	TMEM260	Q9NX78	707 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	SIRPG	Q9P1W8	387 aa		10.42	□□□□□ -0.74
CIITA-208	ENST00000572665	NID2	Q14112	1375 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	ATG2A	Q2TAZ0	1938 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	WDR81	Q562E7	1941 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	WDR64	B1ANS9	1081 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	FAM86B1	E9PN63	330 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	EPB41L2	O43491	1005 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	DCX	O43602	365 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	FAM86B2	P0C5J1	330 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	ZSCAN20	P17040	1043 aa	Predicted RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	SFN	P31947	248 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	HSPA4	P34932	840 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	NDUFV1	P49821	464 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	CDC42EP1	Q00587	391 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	CDK5R2	Q13319	367 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	SMAD4	Q13485	552 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	SMAD2	Q15796	467 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	PLA2G4E	Q3MJ16	856 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	LARP1B	Q659C4	914 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	CPLX2	Q6PUV4	134 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	CCDC60	Q8IWA6	550 aa	Predicted RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	METTL13	Q8N6R0	699 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	TRAPPC12	Q8WVT3	735 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	BRF1	Q92994	677 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	FAM83C	Q9BQN1	747 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	ELAC1	Q9H777	363 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	ALG13	Q9NP73	1137 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	SH3GLB2	Q9NR46	395 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	NRBP2	Q9NSY0	501 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	CD207	Q9UJ71	328 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	MRPL42	Q9Y6G3	142 aa	Known RBP	10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	REV3L	O60673	3130 aa		10.41	□□□□□ -0.74
CIITA-208	ENST00000572665	MUC3A	Q02505	3323 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	IGLV3-22	A0A075B6J6	115 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	FAM86C2P	A6NEL3	165 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	CCNE2	O96020	404 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	LINC00271	P0C7V0	271 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	CIITA	P33076	1130 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	JAK3	P52333	1124 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	ZP2	Q05996	745 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	HYAL1	Q12794	435 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	BMS1	Q14692	1282 aa	Known RBP	10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	FXN	Q16595	210 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	PAN2	Q504Q3	1202 aa	Known RBP	10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	PRR16	Q569H4	304 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	KIAA0319L	Q8IZA0	1049 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	ABI1	Q8IZP0	508 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	FAM177A1	Q8N128	213 aa	Predicted RBP	10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	DNAJB8	Q8NHS0	232 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	SPPL3	Q8TCT6	385 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	MICAL1	Q8TDZ2	1067 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	POF1B	Q8WVV4	589 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	CRYGN	Q8WXF5	182 aa		10.4	□□□□□ -0.74
CIITA-208	ENST00000572665	LINC01599	Q8WXQ3	324 aa		10.4	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms