RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TNK2Q07912 1038 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 ADCK5Q3MIX3 580 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 DCAF4L1Q3SXM0 396 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 GALNT17Q6IS24 598 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 NEK8Q86SG6 692 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 FBXL16Q8N461 479 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 APPL2Q8NEU8 664 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 SHKBP1Q8TBC3 707 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 CXCL16Q9H2A7 254 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 ATXN3LQ9H3M9 355 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 GOLGA2P5Q9HBQ8 144 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 KCNMB3Q9NPA1 279 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 TOPORSQ9NS56 1045 aaPredicted RBP12.16□□□□□ -0.46
VPS53-207ENST00000570510 ANKEF1Q9NU02 776 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 AFF4Q9UHB7 1163 aaKnown RBP12.16□□□□□ -0.46
VPS53-207ENST00000570510 FBXL5Q9UKA1 691 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 PODXLO00592 558 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 CPLX1O14810 134 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 MOSPD3O75425 235 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 SLITRK3O94933 977 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 ZIC2O95409 532 aaPredicted RBP12.15□□□□□ -0.46
VPS53-207ENST00000570510 FGF19O95750 216 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 ATP2B1P20020 1258 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 IGFBP6P24592 240 aaPredicted RBP12.15□□□□□ -0.46
VPS53-207ENST00000570510 DGKEP52429 567 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 EPHA5P54756 1037 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 SIM1P81133 766 aaPredicted RBP12.15□□□□□ -0.46
VPS53-207ENST00000570510 FAM187BQ17R55 369 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 USP39Q53GS9 565 aaKnown RBP12.15□□□□□ -0.46
VPS53-207ENST00000570510 WDR44Q5JSH3 913 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 PKN3Q6P5Z2 889 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 CYP2U1Q7Z449 544 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 C11orf74Q86VG3 221 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 DEPTORQ8TB45 409 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 BPIFB1Q8TDL5 484 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 RSPRY1Q96DX4 576 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 PPP1R10Q96QC0 940 aaKnown RBP12.15□□□□□ -0.46
VPS53-207ENST00000570510 EIF2AK1Q9BQI3 630 aaKnown RBP12.15□□□□□ -0.46
VPS53-207ENST00000570510 FZD8Q9H461 694 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 KLK13Q9UKR3 277 aa12.15□□□□□ -0.46
VPS53-207ENST00000570510 NCANO14594 1321 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 H0Y626 953 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 RNF40O75150 1001 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 TRIM16O95361 564 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 APBB3O95704 486 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 MCM4P33991 863 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 LMAN2Q12907 356 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 PSMD2Q13200 908 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 TAF12Q16514 161 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 SOWAHCQ53LP3 525 aaPredicted RBP12.14□□□□□ -0.47
VPS53-207ENST00000570510 GPR158Q5T848 1215 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 PDZD3Q86UT5 571 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 C3orf58Q8NDZ4 430 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 MCPH1Q8NEM0 835 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 PIGOQ8TEQ8 1089 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 GCNAQ96QF7 691 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 CCDC94Q9BW85 323 aaPredicted RBP12.14□□□□□ -0.47
VPS53-207ENST00000570510 NUSAP1Q9BXS6 441 aaKnown RBP12.14□□□□□ -0.47
VPS53-207ENST00000570510 GPRC5CQ9NQ84 441 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 OBP2AQ9NY56 170 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 DAXXQ9UER7 740 aaPredicted RBP12.14□□□□□ -0.47
VPS53-207ENST00000570510 CIZ1Q9ULV3 898 aaPredicted RBP12.14□□□□□ -0.47
VPS53-207ENST00000570510 INVSQ9Y283 1065 aa12.14□□□□□ -0.47
VPS53-207ENST00000570510 SPAG17Q6Q759 2223 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 SMIM28A0A1B0GU29 152 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 ACKR2O00590 384 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 DEXIO95424 95 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 CPA1P15085 419 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 PSMA5P28066 241 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 HSPA4P34932 840 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 MAPK8P45983 427 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 DHPSP49366 369 aaPredicted RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 MCM2P49736 904 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 RARRES1P49788 294 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 ATXN3P54252 364 aaPredicted RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 NTRK3Q16288 839 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 TMEM196Q5HYL7 178 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 STXBP5Q5T5C0 1151 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 CC2D1AQ6P1N0 951 aaPredicted RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 CPLX2Q6PUV4 134 aaKnown RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 BLOC1S2Q6QNY1 142 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 RNF19BQ6ZMZ0 732 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 USP37Q86T82 979 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 RASEFQ8IZ41 740 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 DAGLBQ8NCG7 672 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 PIGKQ92643 395 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 HAS1Q92839 578 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 ACDQ96AP0 544 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 JAKMIP1Q96N16 626 aaKnown RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 PGLYRP2Q96PD5 576 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 NCOA5Q9HCD5 579 aaKnown RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 PCDHA12Q9UN75 941 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 USP20Q9Y2K6 914 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 YIPF1Q9Y548 306 aa12.13□□□□□ -0.47
VPS53-207ENST00000570510 DSPP15924 2871 aaKnown RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 SETXQ7Z333 2677 aaKnown RBP12.13□□□□□ -0.47
VPS53-207ENST00000570510 VWA8A3KMH1 1905 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 SPAARA0A1B0GVQ0 90 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 TTLL13PA6NNM8 815 aa12.12□□□□□ -0.47
VPS53-207ENST00000570510 PATE3B3GLJ2 98 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms