RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 DYNLT1P63172 113 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 NOMO3P69849 1222 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 LACTBP83111 547 aaPredicted RBP10.56□□□□□ -0.72
VPS53-206ENST00000570359 PPFIA1Q13136 1202 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 CUL1Q13616 776 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 MXD4Q14582 209 aaPredicted RBP10.56□□□□□ -0.72
VPS53-206ENST00000570359 SMTNL2Q2TAL5 461 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 KRT71Q3SY84 523 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 LIN9Q5TKA1 542 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 CCDC62Q6P9F0 684 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 DCUN1D2Q6PH85 259 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 USP50Q70EL3 339 aaPredicted RBP10.56□□□□□ -0.72
VPS53-206ENST00000570359 TFAP2BQ92481 460 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 ERP44Q9BS26 406 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 CDT1Q9H211 546 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 SYNCQ9H7C4 482 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 YY1AP1Q9H869 796 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 RPF1Q9H9Y2 349 aaKnown RBP10.56□□□□□ -0.72
VPS53-206ENST00000570359 MTUS1Q9ULD2 1270 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 STYXL1Q9Y6J8 313 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 GOLGA8KD6RF30 607 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 SHBGP04278 402 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 MTM1Q13496 603 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 GLRA4Q5JXX5 417 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 ALS2CLQ60I27 953 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 JADE1Q6IE81 842 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 MPZL3Q6UWV2 235 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 LRRC31Q6UY01 552 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 ENOSF1Q7L5Y1 443 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 ABRAQ8N0Z2 381 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 CAPS2Q9BXY5 557 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 RAB17Q9H0T7 212 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 CXCL16Q9H2A7 254 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 SMYD3Q9H7B4 428 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 ERAP1Q9NZ08 941 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 UVRAGQ9P2Y5 699 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 CPA4Q9UI42 421 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 HES2Q9Y543 173 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 DNAJC25-GNG10A0A024R161 153 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 KRT17Q04695 432 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 ARHGAP1Q07960 439 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 TFDP1Q14186 410 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 HP1BP3Q5SSJ5 553 aaPredicted RBP10.55□□□□□ -0.72
VPS53-206ENST00000570359 B4GALNT4Q76KP1 1039 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 MON1BQ7L1V2 547 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 TMC3Q7Z5M5 1100 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 IQCKQ8N0W5 287 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 ANKRD36BP1Q96IX9 119 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 MROH8Q9H579 483 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 TMEM134Q9H6X4 195 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 RASAL2Q9UJF2 1139 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 PCDHA3Q9Y5H8 950 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 LACTBL1A8MY62 500 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 PMM2O15305 246 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 HBP1O60381 514 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 ZC3H11AO75152 810 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS53-206ENST00000570359 HOXC6P09630 235 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 MYZAPP0CAP1 466 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 STAG3L1P0CL83 205 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 CHRM1P11229 460 aaPredicted RBP10.55□□□□□ -0.72
VPS53-206ENST00000570359 COILP38432 576 aaPredicted RBP10.55□□□□□ -0.72
VPS53-206ENST00000570359 HSPA9P38646 679 aaKnown RBP10.55□□□□□ -0.72
VPS53-206ENST00000570359 BPIFB4P59827 614 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 MBTD1Q05BQ5 628 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 MAMLD1Q13495 774 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 AMHR2Q16671 573 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 GSTA5Q7RTV2 222 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 ANKS1BQ7Z6G8 1248 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 WDR49Q8IV35 697 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 KIAA0319LQ8IZA0 1049 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 EMC1Q8N766 993 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 TMEM174Q8WUU8 243 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 BRI3BPQ8WY22 251 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 CD101Q93033 1021 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 NIF3L1Q9GZT8 377 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 C10orf88Q9H8K7 445 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 ZWILCHQ9H900 591 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 SETD4Q9NVD3 440 aa10.55□□□□□ -0.72
VPS53-206ENST00000570359 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.55□□□□□ -0.72
VPS53-206ENST00000570359 NOVA2Q9UNW9 492 aaKnown RBP10.55□□□□□ -0.72
VPS53-206ENST00000570359 F8VP50 259 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 FAM189A1O60320 539 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CELF2O95319 508 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 C22orf31O95567 290 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ASS1P00966 412 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 PIGRP01833 764 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 TBXAS1P24557 533 aaPredicted RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 POU5F1Q01860 360 aaKnown RBP10.54□□□□□ -0.72
VPS53-206ENST00000570359 ZNF844Q08AG5 666 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 KCNT1Q5JUK3 1230 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 TXNRD3NBQ6F5E7 133 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 DENND1BQ6P3S1 775 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 DNAJC24Q6P3W2 148 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 ZPBP2Q6X784 338 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 CAPN12Q6ZSI9 719 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 UBA3Q8TBC4 463 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 RUBCNQ92622 972 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 LRRC45Q96CN5 670 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 RPS6KC1Q96S38 1066 aa10.54□□□□□ -0.72
VPS53-206ENST00000570359 FAM114A2Q9NRY5 505 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms