RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 GP6Q9HCN6 339 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ARGLU1Q9NWB6 273 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 TMOD4Q9NZQ9 345 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 LRP2BPQ9P2M1 347 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 HECAQ9UBI9 543 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 EIF2B4Q9UI10 523 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 FEM1BQ9UK73 627 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TMPRSS11EQ9UL52 423 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 CBLCQ9ULV8 474 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 RAXQ9Y2V3 346 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 SAMM50Q9Y512 469 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 MRFAP1Q9Y605 127 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 FLT1P17948 1338 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 MYO18BQ8IUG5 2567 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 CPDO75976 1380 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ITPR3Q14573 2671 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 MED19A0JLT2 244 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 PI4KAP2A4QPH2 592 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 AQP12BA6NM10 295 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 J3QW42 95 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 AQP7O14520 342 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ERAL1O75616 437 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 KCNH1O95259 989 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 TGDSO95455 350 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 AMY2AP04746 511 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CYP17A1P05093 508 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 SLC3A2P08195 630 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 NR2F1P10589 423 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 LCP1P13796 627 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 FOSL1P15407 271 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 TATP17735 454 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 ITGB5P18084 799 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 RPL17P18621 184 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 AMY2BP19961 511 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CHRNA5P30532 468 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 GRK4P32298 578 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 BMP8BP34820 402 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 KRT9P35527 623 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 DNM2P50570 870 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CCT4P50991 539 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 CACNB3P54284 484 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 YARSP54577 528 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 CASP6P55212 293 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 GPR85P60893 370 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 LACTBP83111 547 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 FMO1Q01740 532 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CREMQ03060 361 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 PDE4BQ07343 736 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 SPEM2Q0P670 501 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 PTK2BQ14289 1009 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ACAP2Q15057 778 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 UBE3CQ15386 1083 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ASIC2Q16515 512 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ST3GAL2Q16842 350 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 C3orf36Q3SXR2 165 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 FLYWCH1Q4VC44 716 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 PARP10Q53GL7 1025 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CCDC62Q6P9F0 684 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ABRAXAS1Q6UWZ7 409 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 BICDL1Q6ZP65 573 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 FAM47EQ6ZV65 393 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 UBE3DQ7Z6J8 389 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 DNAJB7Q7Z6W7 309 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 ADGRA1Q86SQ6 560 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 GLRX5Q86SX6 157 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ARHGEF25Q86VW2 580 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ERC1Q8IUD2 1116 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 LIX1LQ8IVB5 337 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ZNF619Q8N2I2 560 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 AGBL5Q8NDL9 886 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 GOT1L1Q8NHS2 421 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 BAHD1Q8TBE0 780 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 ASAP3Q8TDY4 903 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 OTUD7AQ8TE49 926 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 UCMAQ8WVF2 138 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ZNF606Q8WXB4 792 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 BSNDQ8WZ55 320 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 ERCC4Q92889 916 aaPredicted RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 COPS5Q92905 334 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 FERMT2Q96AC1 680 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 MSLNLQ96KJ4 702 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 NSUN5Q96P11 429 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 KCNC2Q96PR1 638 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 DMRTA2Q96SC8 542 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 SDF4Q9BRK5 362 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 EMILIN2Q9BXX0 1053 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 USP44Q9H0E7 712 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CCDC68Q9H2F9 335 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 RNPEPQ9H4A4 650 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 C14orf93Q9H972 538 aaKnown RBP3.36□□□□□ -1.87
VPS35-209ENST00000568642 JMJD4Q9H9V9 463 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 CBX8Q9HC52 389 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 SMURF1Q9HCE7 757 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 PREBQ9HCU5 417 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 RXFP3Q9NSD7 469 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 DECR2Q9NUI1 292 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 KIF17Q9P2E2 1029 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 KLHL3Q9UH77 587 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 GTF3C4Q9UKN8 822 aa3.36□□□□□ -1.87
VPS35-209ENST00000568642 PCDHA4Q9UN74 947 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms