RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 LAMTOR5O43504 91 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 LRRN2O75325 713 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 RPS9P46781 194 aaKnown RBP18.32■□□□□ 0.52
CLN3-231ENST00000568422 EPHA5P54756 1037 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 TWF1Q12792 350 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 PLD1Q13393 1074 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 FAM78AQ5JUQ0 283 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 RNF19BQ6ZMZ0 732 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 TPRG1Q6ZUI0 275 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 USP37Q86T82 979 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 BEST2Q8NFU1 509 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 CLDN23Q96B33 292 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 ASB16Q96NS5 453 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 PLA2G2FQ9BZM2 168 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 GPR88Q9GZN0 384 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 TRPV5Q9NQA5 729 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 ASAH2Q9NR71 780 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 BLOC1S4Q9NUP1 217 aa18.32■□□□□ 0.52
CLN3-231ENST00000568422 MTF2Q9Y483 593 aaPredicted RBP18.32■□□□□ 0.52
CLN3-231ENST00000568422 A0A0B4J269 797 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 LACTBL1A8MY62 500 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 K7ENM7 598 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 TRAK2O60296 914 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 FAM189A1O60320 539 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 CD2BP2O95400 341 aaKnown RBP18.31■□□□□ 0.52
CLN3-231ENST00000568422 KRT18P05783 430 aaKnown RBP18.31■□□□□ 0.52
CLN3-231ENST00000568422 TYMPP19971 482 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 FCARP24071 287 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 TNFSF9P41273 254 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 CCR2P41597 374 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 SPAG1Q07617 926 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 ENOX2Q16206 610 aaKnown RBP18.31■□□□□ 0.52
CLN3-231ENST00000568422 MAML2Q8IZL2 1156 aaPredicted RBP18.31■□□□□ 0.52
CLN3-231ENST00000568422 RASSF8Q8NHQ8 419 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 RAD54LQ92698 747 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 SMARCD2Q92925 531 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 IRF7Q92985 503 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 E2F7Q96AV8 911 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 TCEAL4Q96EI5 215 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 TRMT61BQ9BVS5 477 aaKnown RBP18.31■□□□□ 0.52
CLN3-231ENST00000568422 BRD9Q9H8M2 597 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 CEP72Q9P209 647 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 COL4A3Q01955 1670 aa18.31■□□□□ 0.52
CLN3-231ENST00000568422 MAN2B1O00754 1011 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 KINO60870 393 aaKnown RBP18.3■□□□□ 0.52
CLN3-231ENST00000568422 PSMC3P17980 439 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 CD72P21854 359 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 GPR17Q13304 367 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 MYBPC2Q14324 1141 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 DHX8Q14562 1220 aaKnown RBP18.3■□□□□ 0.52
CLN3-231ENST00000568422 SPATA1Q5VX52 437 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 POTEHQ6S545 545 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 DSTYKQ6XUX3 929 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 ERMP1Q7Z2K6 904 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 DEPDC1BQ8WUY9 529 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 MSTO1Q9BUK6 570 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 TRPV4Q9HBA0 871 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 DERAQ9Y315 318 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 ANK1P16157 1881 aa18.3■□□□□ 0.52
CLN3-231ENST00000568422 TICRRQ7Z2Z1 1910 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 TBCAO75347 108 aaKnown RBP18.29■□□□□ 0.52
CLN3-231ENST00000568422 PLCG1P19174 1290 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 ID4P47928 161 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 EPHB3P54753 998 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 LILRA4P59901 499 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 GTF2BQ00403 316 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 MCM6Q14566 821 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 OVOS1Q6IE37 1185 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 SLFN12LQ6IEE8 588 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 MAP4K3Q8IVH8 894 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 HS6ST3Q8IZP7 471 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 LARP4BQ92615 738 aaKnown RBP18.29■□□□□ 0.52
CLN3-231ENST00000568422 ST6GALNAC4Q9H4F1 302 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 HEBP1Q9NRV9 189 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 HSFX1Q9UBD0 423 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 CPSF3Q9UKF6 684 aaKnown RBP18.29■□□□□ 0.52
CLN3-231ENST00000568422 YIPF1Q9Y548 306 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 ASB3Q9Y575 518 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 PCDHGA2Q9Y5H1 932 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 TIMM13Q9Y5L4 95 aaPredicted RBP18.29■□□□□ 0.52
CLN3-231ENST00000568422 DCHS1Q96JQ0 3298 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 COL4A2P08572 1712 aa18.29■□□□□ 0.52
CLN3-231ENST00000568422 SPTLC1O15269 473 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 MOSPD3O75425 235 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 ODC1P11926 461 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 MYL4P12829 197 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 TARSP26639 723 aaKnown RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 DDIT3P35638 169 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 ALDH1A3P47895 512 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 MLLT6P55198 1093 aaPredicted RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 POU5F1Q01860 360 aaKnown RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 KARSQ15046 597 aaKnown RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 SF3A1Q15459 793 aaKnown RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 ARMCX5Q6P1M9 558 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 ZSCAN18Q8TBC5 510 aaPredicted RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 LRRC15Q8TF66 581 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 RUBCNQ92622 972 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 ZSWIM3Q96MP5 696 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 IER2Q9BTL4 223 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 CCSER1Q9C0I3 900 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms