RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C1orf131Q8NDD1 294 aaKnown RBP21.59■■□□□ 1.05
CLN3-230ENST00000568076 XYLT2Q9H1B5 865 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 CDT1Q9H211 546 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 IFT122Q9HBG6 1241 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 CISHQ9NSE2 258 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 PDHXO00330 501 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 B4GALT4O60513 344 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 PPFIA2O75334 1257 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 GJB6O95452 261 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 RPL21P46778 160 aaKnown RBP21.59■■□□□ 1.05
CLN3-230ENST00000568076 ZNF844Q08AG5 666 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 FBXO25Q8TCJ0 367 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 MS4A4AQ96JQ5 239 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 TMBIM4Q9HC24 238 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 TNFSF13BQ9Y275 285 aa21.59■■□□□ 1.05
CLN3-230ENST00000568076 ASAP2O43150 1006 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 CSDE1O75534 798 aaKnown RBP21.58■■□□□ 1.05
CLN3-230ENST00000568076 TMEM191BP0C7N4 346 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 POTEJP0CG39 1038 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 MTMR3Q13615 1198 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 LAMC2Q13753 1193 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 ZNF394Q53GI3 561 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 LINC01465Q8N7H1 131 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 GTF3C2Q8WUA4 911 aaPredicted RBP21.58■■□□□ 1.05
CLN3-230ENST00000568076 ATP6V1G3Q96LB4 118 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 NFKBIZQ9BYH8 718 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 LRRC19Q9H756 370 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 ZNF408Q9H9D4 720 aa21.58■■□□□ 1.05
CLN3-230ENST00000568076 BTBD19C9JJ37 291 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 GPR25O00155 361 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 PODXLO00592 558 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 MEFVO15553 781 aaPredicted RBP21.57■■□□□ 1.04
CLN3-230ENST00000568076 WEE2P0C1S8 567 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 CXCL8P10145 99 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 MMP8P22894 467 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 BRD2P25440 801 aaKnown RBP21.57■■□□□ 1.04
CLN3-230ENST00000568076 ASPAP45381 313 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 FNTAP49354 379 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 PLTPP55058 493 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 SKOR1P84550 965 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 TRPC3Q13507 836 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 SCARA5Q6ZMJ2 495 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 CCDC105Q8IYK2 499 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 TMEM130Q8N3G9 435 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 C1orf54Q8WWF1 131 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 KATNBL1Q9H079 304 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 MRPL47Q9HD33 250 aaKnown RBP21.57■■□□□ 1.04
CLN3-230ENST00000568076 ATP8A1Q9Y2Q0 1164 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 EVPLQ92817 2033 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 IRAK1P51617 712 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 TAS2R40P59535 323 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 CCNA1P78396 465 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 MKRN3Q13064 507 aaKnown RBP21.57■■□□□ 1.04
CLN3-230ENST00000568076 AMHR2Q16671 573 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 TMEM132AQ24JP5 1023 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 ZNF699Q32M78 642 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 ZNF484Q5JVG2 852 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 FOXR1Q6PIV2 292 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 AFG1LQ8WV93 481 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 PPP1R16BQ96T49 567 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 PLVAPQ9BX97 442 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 CAPS2Q9BXY5 557 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 PTPN22Q9Y2R2 807 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 MGAMO43451 1857 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 ANK1P16157 1881 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 PLXNA1Q9UIW2 1896 aa21.57■■□□□ 1.04
CLN3-230ENST00000568076 GRIN2DO15399 1336 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 TLR3O15455 904 aaKnown RBP21.56■■□□□ 1.04
CLN3-230ENST00000568076 GH1P01241 217 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 ADCYAP1R1P41586 468 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 PPTC7Q8NI37 304 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 TFAP2BQ92481 460 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 EPB41L4BQ9H329 900 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 VTA1Q9NP79 307 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 CALCOCO1Q9P1Z2 691 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 SCINQ9Y6U3 715 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 PLXNB2O15031 1838 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 A0A087WZ62 844 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.56■■□□□ 1.04
CLN3-230ENST00000568076 RBM47A0AV96 593 aaKnown RBP21.56■■□□□ 1.04
CLN3-230ENST00000568076 ZNF286BP0CG31 522 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 ANKRD36BP1Q96IX9 119 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 RUNDC3BQ96NL0 473 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 FDXACB1Q9BRP7 624 aaPredicted RBP21.56■■□□□ 1.04
CLN3-230ENST00000568076 LRRC4CQ9HCJ2 640 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 CHST7Q9NS84 486 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 PRMT7Q9NVM4 692 aaPredicted RBP21.56■■□□□ 1.04
CLN3-230ENST00000568076 SIX4Q9UIU6 781 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 POLIQ9UNA4 740 aa21.56■■□□□ 1.04
CLN3-230ENST00000568076 TCRBV5S1A1TA0A578 114 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 TNNC2P02585 160 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 ATP1A2P50993 1020 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 RPL7AP62424 266 aaKnown RBP21.55■■□□□ 1.04
CLN3-230ENST00000568076 POU5F1BQ06416 359 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 FAM187BQ17R55 369 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 SGO2Q562F6 1265 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 EMC10Q5UCC4 262 aa21.55■■□□□ 1.04
CLN3-230ENST00000568076 MAP1SQ66K74 1059 aaPredicted RBP21.55■■□□□ 1.04
CLN3-230ENST00000568076 TTC19Q6DKK2 380 aaPredicted RBP21.55■■□□□ 1.04
CLN3-230ENST00000568076 PPP1R2P3Q6NXS1 205 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms