RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CDC42EP4Q9H3Q1 356 aaKnown RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 ST6GALNAC4Q9H4F1 302 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 NOD2Q9HC29 1040 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 USP15Q9Y4E8 981 aaPredicted RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 LRRC37A2A6NM11 1700 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 SORBS3O60504 671 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 CYP11B1P15538 503 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 ADORA2AP29274 412 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 MAN1A1P33908 653 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 GTF2BQ00403 316 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 CDR2Q01850 454 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 LONRF1Q17RB8 773 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 CCDC38Q502W7 563 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 SGO2Q562F6 1265 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 CRELD2Q6UXH1 353 aaPredicted RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 SEPT14Q6ZU15 432 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 SYDE1Q6ZW31 735 aaPredicted RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 MIER3Q7Z3K6 550 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 GBP7Q8N8V2 638 aaPredicted RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 PLEKHO2Q8TD55 490 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 PSPC1Q8WXF1 523 aaKnown RBP14.08□□□□□ -0.16
VPS4A-204ENST00000566354 HHIPL1Q96JK4 782 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 BTBD6Q96KE9 485 aa14.08□□□□□ -0.16
VPS4A-204ENST00000566354 CENPFP49454 3210 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 PLXNA1Q9UIW2 1896 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 TP73O15350 636 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 OAS1P00973 400 aaKnown RBP14.07□□□□□ -0.16
VPS4A-204ENST00000566354 KCNA2P16389 499 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 ELF1P32519 619 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 INHBEP58166 350 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 KRT17Q04695 432 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 HAUS6Q7Z4H7 955 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 GPR142Q7Z601 462 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 MAIP1Q8WWC4 291 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 KIFAP3Q92845 792 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 AAASQ9NRG9 546 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 TELO2Q9Y4R8 837 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 TMEM120BA0PK00 339 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 CLDN3O15551 220 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 STAM2O75886 525 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 SUN1O94901 812 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 SP2Q02086 613 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 CAV1Q03135 178 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 GNPTABQ3T906 1256 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 FAM133BQ5BKY9 247 aaKnown RBP14.07□□□□□ -0.16
VPS4A-204ENST00000566354 RHBDF2Q6PJF5 856 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 DDX23Q9BUQ8 820 aaKnown RBP14.07□□□□□ -0.16
VPS4A-204ENST00000566354 ATP6V0A4Q9HBG4 840 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 TBC1D22BQ9NU19 505 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 BAIAP2L1Q9UHR4 511 aa14.07□□□□□ -0.16
VPS4A-204ENST00000566354 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.07□□□□□ -0.16
VPS4A-204ENST00000566354 SPATA31C2B4DYI2 1134 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ACSL3O95573 720 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TTC4O95801 387 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 CCNE2O96020 404 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 DLATP10515 647 aaKnown RBP14.06□□□□□ -0.16
VPS4A-204ENST00000566354 RARRES1P49788 294 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 SREBF2Q12772 1141 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 SF3A3Q12874 501 aaKnown RBP eCLIP14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ZNF268Q14587 947 aaPredicted RBP14.06□□□□□ -0.16
VPS4A-204ENST00000566354 KRT39Q6A163 491 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ACAD10Q6JQN1 1059 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 CPNE8Q86YQ8 564 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 C1orf54Q8WWF1 131 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TCP11Q8WWU5 503 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 SNF8Q96H20 258 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TSPAN18Q96SJ8 248 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 POP1Q99575 1024 aaKnown RBP14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TIPINQ9BVW5 301 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ACP6Q9NPH0 428 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ABCF3Q9NUQ8 709 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ASIC3Q9UHC3 531 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 COQ4Q9Y3A0 265 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 IVNS1ABPQ9Y6Y0 642 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TCP11X1B4DZS4 312 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 AOC2O75106 756 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TCEA3O75764 348 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 CLTAP09496 248 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 CRHR2Q13324 411 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 E2F5Q15329 346 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 TBC1D1Q86TI0 1168 aaPredicted RBP14.06□□□□□ -0.16
VPS4A-204ENST00000566354 SLC17A8Q8NDX2 589 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 ZSWIM2Q8NEG5 633 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 CCHCR1Q8TD31 782 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 GRK7Q8WTQ7 553 aa14.06□□□□□ -0.16
VPS4A-204ENST00000566354 SUDS3Q9H7L9 328 aaPredicted RBP14.06□□□□□ -0.16
VPS4A-204ENST00000566354 O00370 1275 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 UBOX5O94941 541 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 GAS8O95995 478 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 IVDP26440 423 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 TM4SF4P48230 202 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 GPC3P51654 580 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 SP4Q02446 784 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 PTK6Q13882 451 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 LRRC14Q15048 493 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 SNRNP35Q16560 246 aaKnown RBP14.05□□□□□ -0.16
VPS4A-204ENST00000566354 ZNF792Q3KQV3 632 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 GALNTL6Q49A17 601 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 VSTM1Q6UX27 236 aa14.05□□□□□ -0.16
VPS4A-204ENST00000566354 C17orf99Q6UX52 265 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms