RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 LEO1Q8WVC0 666 aaPredicted RBP19.92■□□□□ 0.78
CLN3-221ENST00000566057 RSAD2Q8WXG1 361 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 PCIF1Q9H4Z3 704 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 DPP3Q9NY33 737 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 EPS15L1Q9UBC2 864 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 KCNH3Q9ULD8 1083 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 HCN4Q9Y3Q4 1203 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 C2CD2Q9Y426 696 aa19.92■□□□□ 0.78
CLN3-221ENST00000566057 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.91■□□□□ 0.78
CLN3-221ENST00000566057 XYLBO75191 536 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 LAMP2P13473 410 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 ATF2P15336 505 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 FSHRP23945 695 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 AFMP43652 599 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 YWHAHQ04917 246 aaPredicted RBP19.91■□□□□ 0.78
CLN3-221ENST00000566057 ZNF280DQ6N043 979 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 RTL10Q7L3V2 364 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 EPM2AIP1Q7L775 607 aaPredicted RBP19.91■□□□□ 0.78
CLN3-221ENST00000566057 GRAMD1CQ8IYS0 662 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 MFSD14AQ96MC6 490 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 TMEM206Q9H813 350 aa19.91■□□□□ 0.78
CLN3-221ENST00000566057 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-221ENST00000566057 DNMT3BQ9UBC3 853 aaKnown RBP19.91■□□□□ 0.78
CLN3-221ENST00000566057 ARHGEF37A1IGU5 675 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 IL18RAPO95256 599 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 PDGFBP01127 241 aaPredicted RBP19.9■□□□□ 0.78
CLN3-221ENST00000566057 POU2F2P09086 479 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 EHHADHQ08426 723 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 ADCY1Q08828 1119 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 CUL4BQ13620 913 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 UNC13DQ70J99 1090 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 TCEAL8Q8IYN2 117 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 ST13P5Q8NFI4 369 aaPredicted RBP19.9■□□□□ 0.78
CLN3-221ENST00000566057 ITFG1Q8TB96 612 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 ZNF507Q8TCN5 953 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 SENP8Q96LD8 212 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 MAGEF1Q9HAY2 307 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 CYP4F11Q9HBI6 524 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 SERTAD1Q9UHV2 236 aa19.9■□□□□ 0.78
CLN3-221ENST00000566057 A0A1B0GVL5 298 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 TULP1O00294 542 aaPredicted RBP19.89■□□□□ 0.77
CLN3-221ENST00000566057 PRRG1O14668 218 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 EXTL3O43909 919 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 VNN2O95498 520 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 LDHAP00338 332 aaKnown RBP19.89■□□□□ 0.77
CLN3-221ENST00000566057 OR4Q2P0C623 313 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 ELF1P32519 619 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 TDGQ13569 410 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 FAM26FQ5R3K3 315 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 TPGS2Q68CL5 300 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 SCARA3Q6AZY7 606 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 RNF19BQ6ZMZ0 732 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 BRSK2Q8IWQ3 736 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 NOC3LQ8WTT2 800 aaKnown RBP19.89■□□□□ 0.77
CLN3-221ENST00000566057 FAM84AQ96KN4 292 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 SPATA32Q96LK8 384 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 IGSF9Q9P2J2 1179 aa19.89■□□□□ 0.77
CLN3-221ENST00000566057 EIF3DO15371 548 aaKnown RBP eCLIP19.88■□□□□ 0.77
CLN3-221ENST00000566057 ACTN4O43707 911 aaKnown RBP19.88■□□□□ 0.77
CLN3-221ENST00000566057 SLFN14P0C7P3 912 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 TYMPP19971 482 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 CMA1P23946 247 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 KRT85P78386 507 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 OVOS1Q6IE37 1185 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 ARMCX5Q6P1M9 558 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 STXBP4Q6ZWJ1 553 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 USP37Q86T82 979 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 FBXL6Q8N531 539 aa19.88■□□□□ 0.77
CLN3-221ENST00000566057 RBAKQ9NYW8 714 aaPredicted RBP19.88■□□□□ 0.77
CLN3-221ENST00000566057 AFF4Q9UHB7 1163 aaKnown RBP19.88■□□□□ 0.77
CLN3-221ENST00000566057 ANHXE9PGG2 379 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 TGFB1I1O43294 461 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 NARSO43776 548 aaKnown RBP19.87■□□□□ 0.77
CLN3-221ENST00000566057 CPB1P15086 417 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 PFKFB1P16118 471 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 TFAMQ00059 246 aaKnown RBP19.87■□□□□ 0.77
CLN3-221ENST00000566057 PABPC1LQ4VXU2 614 aaKnown RBP19.87■□□□□ 0.77
CLN3-221ENST00000566057 NT5DC4Q86YG4 428 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 CEP57L1Q8IYX8 460 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 GPD1LQ8N335 351 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 SLC44A3Q8N4M1 653 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 SCFD1Q8WVM8 642 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 FGF13Q92913 245 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 BORCS6Q96GS4 357 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 PAGE5Q96GU1 130 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 TMEM209Q96SK2 561 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 PDE11AQ9HCR9 933 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 CDH7Q9ULB5 785 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 ARIH1Q9Y4X5 557 aaPredicted RBP19.87■□□□□ 0.77
CLN3-221ENST00000566057 INSL5Q9Y5Q6 135 aa19.87■□□□□ 0.77
CLN3-221ENST00000566057 PVALEFA0A1B0GWK0 134 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 LRG1P02750 347 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 CYP11A1P05108 521 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 RHOP08100 348 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 ODC1P11926 461 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 PAX3P23760 479 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 TAF6P49848 677 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 HTR4Q13639 388 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 SLC5A9Q2M3M2 681 aa19.86■□□□□ 0.77
CLN3-221ENST00000566057 POTEHQ6S545 545 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms