RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 SMARCA1P28370 1054 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 PIK3CGP48736 1102 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 HMGA2P52926 109 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 PTTG1IPP53801 180 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 GNAI1P63096 354 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 NOMO3P69849 1222 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 CXADRP78310 365 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 NKX6-1P78426 367 aaPredicted RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 GUCY1B3Q02153 619 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 TAP2Q03519 686 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 PIGFQ07326 219 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 KIF22Q14807 665 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 PTPAQ15257 358 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 FLYWCH1Q4VC44 716 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 CCDC93Q567U6 631 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 NOMO2Q5JPE7 1267 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 ABHD17BQ5VST6 288 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 FOXR2Q6PJQ5 311 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 EPM2AIP1Q7L775 607 aaPredicted RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 HEATR3Q7Z4Q2 680 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 DENND1CQ8IV53 801 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 CPEB3Q8NE35 698 aaKnown RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 SLC35G2Q8TBE7 412 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 DDX17Q92841 729 aaKnown RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 MTFMTQ96DP5 389 aaKnown RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 COQ10AQ96MF6 247 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 TAAR9Q96RI9 348 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 VRK1Q99986 396 aaPredicted RBP4.26□□□□□ -1.73
VPS35-203ENST00000562420 GALNT9Q9HCQ5 603 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 LMBRD1Q9NUN5 540 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 TCEAL9Q9UHQ7 104 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 STXBP5LQ9Y2K9 1186 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 MYO15BQ96JP2 1530 aa4.26□□□□□ -1.73
VPS35-203ENST00000562420 PIPSLA2A3N6 862 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 AGFG2O95081 481 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 PRSS23O95084 383 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 NDUFA10O95299 355 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 GPANK1O95872 356 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 FOSP01100 380 aaPredicted RBP4.25□□□□□ -1.73
VPS35-203ENST00000562420 PTMAP06454 111 aaKnown RBP4.25□□□□□ -1.73
VPS35-203ENST00000562420 FCER1AP12319 257 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 DPTQ07507 201 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 MINDY4Q4G0A6 757 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 UTP14CQ5TAP6 766 aaKnown RBP4.25□□□□□ -1.73
VPS35-203ENST00000562420 SP5Q6BEB4 398 aaPredicted RBP4.25□□□□□ -1.73
VPS35-203ENST00000562420 CHPFQ8IZ52 775 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 MAGEB6Q8N7X4 407 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 Q8NA96 180 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 TBC1D15Q8TC07 691 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 LARP4BQ92615 738 aaKnown RBP4.25□□□□□ -1.73
VPS35-203ENST00000562420 RUNDC1Q96C34 613 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 PHACTR3Q96KR7 559 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 KLHL32Q96NJ5 620 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 TEX101Q9BY14 249 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 MRPL46Q9H2W6 279 aaKnown RBP4.25□□□□□ -1.73
VPS35-203ENST00000562420 PNPOQ9NVS9 261 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 ABCF2Q9UG63 623 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 NOX1Q9Y5S8 564 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 HS3ST3A1Q9Y663 406 aa4.25□□□□□ -1.73
VPS35-203ENST00000562420 A0A088AWK7 358 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 GRID2IPA4D2P6 1211 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 LRRC14BA6NHZ5 514 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 CLGNO14967 610 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 TSPAN6O43657 245 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 B3GALT2O43825 422 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 SOAT2O75908 522 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 SPDEFO95238 335 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 MATN4O95460 622 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 SLPIP03973 132 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 RARBP10826 455 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 EGR2P11161 476 aaPredicted RBP4.24□□□□□ -1.73
VPS35-203ENST00000562420 KCNA2P16389 499 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 MCCP23508 829 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 AVPR1BP47901 424 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 VAV2P52735 878 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 INHBCP55103 352 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 CALD1Q05682 793 aaKnown RBP4.24□□□□□ -1.73
VPS35-203ENST00000562420 ZNF844Q08AG5 666 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 SCAPQ12770 1279 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 RESTQ13127 1097 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 CYP2A13Q16696 494 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 Q6ZPA2 131 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 TMPRSS9Q7Z410 1059 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 LDLRAD3Q86YD5 345 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 COLGALT2Q8IYK4 626 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 TMIEQ8NEW7 156 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 BRIX1Q8TDN6 353 aaKnown RBP4.24□□□□□ -1.73
VPS35-203ENST00000562420 TRIM44Q96DX7 344 aaPredicted RBP4.24□□□□□ -1.73
VPS35-203ENST00000562420 MARS2Q96GW9 593 aaKnown RBP4.24□□□□□ -1.73
VPS35-203ENST00000562420 MLST8Q9BVC4 326 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 MRIQ9BWK5 157 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 ALOXE3Q9BYJ1 711 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 SERHL2Q9H4I8 314 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 BRD9Q9H8M2 597 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 SYBUQ9NX95 663 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 HSFX1Q9UBD0 423 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 GABBR1Q9UBS5 961 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 PCDHA3Q9Y5H8 950 aa4.24□□□□□ -1.73
VPS35-203ENST00000562420 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.24□□□□□ -1.73
VPS35-203ENST00000562420 SPATA31A3Q5VYP0 1347 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms