RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PRRG1O14668 218 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 ABLIM3O94929 683 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 IL18RAPO95256 599 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 CPB1P15086 417 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 FSHRP23945 695 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 HOXA9P31269 272 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 AARSP49588 968 aaKnown RBP eCLIP16.96■□□□□ 0.31
VPS39-203ENST00000561797 WNT7BP56706 349 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 LILRA4P59901 499 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 POU5F1Q01860 360 aaKnown RBP16.96■□□□□ 0.31
VPS39-203ENST00000561797 YWHAHQ04917 246 aaPredicted RBP16.96■□□□□ 0.31
VPS39-203ENST00000561797 CUL4BQ13620 913 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 BECN1Q14457 450 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 FAM26FQ5R3K3 315 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 CNNM4Q6P4Q7 775 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 UNC13DQ70J99 1090 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 USP37Q86T82 979 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 EFCAB13Q8IY85 973 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 CYP4F11Q9HBI6 524 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 HCFC1R1Q9NWW0 138 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 C2CD2Q9Y426 696 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 ANO9A1A5B4 782 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 SPTLC1O15269 473 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 SEC24AO95486 1093 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 ATF2P15336 505 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 PFKFB1P16118 471 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 BRSK2Q8IWQ3 736 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 UBALD2Q8IYN6 164 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 RSAD2Q8WXG1 361 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 SENP8Q96LD8 212 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 PYM1Q9BRP8 204 aaKnown RBP16.95■□□□□ 0.3
VPS39-203ENST00000561797 KCNK12Q9HB15 430 aa16.95■□□□□ 0.3
VPS39-203ENST00000561797 RBAKQ9NYW8 714 aaPredicted RBP16.95■□□□□ 0.3
VPS39-203ENST00000561797 EIF3DO15371 548 aaKnown RBP eCLIP16.94■□□□□ 0.3
VPS39-203ENST00000561797 EXTL3O43909 919 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 OAZ2O95190 189 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 LRG1P02750 347 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 OR4Q2P0C623 313 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 SLFN14P0C7P3 912 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 ODC1P11926 461 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 CMA1P23946 247 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 HOXD13P35453 343 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 TFAMQ00059 246 aaKnown RBP16.94■□□□□ 0.3
VPS39-203ENST00000561797 ADCY1Q08828 1119 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 TPGS2Q68CL5 300 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 OVOS1Q6IE37 1185 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 RNF19BQ6ZMZ0 732 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 EPM2AIP1Q7L775 607 aaPredicted RBP16.94■□□□□ 0.3
VPS39-203ENST00000561797 BMP8AQ7Z5Y6 402 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 NELFCDQ8IXH7 590 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 GPD1LQ8N335 351 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 ST13P5Q8NFI4 369 aaPredicted RBP16.94■□□□□ 0.3
VPS39-203ENST00000561797 ZNF507Q8TCN5 953 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 ASIC4Q96FT7 647 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 FAM84AQ96KN4 292 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 MFSD14AQ96MC6 490 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 SLC39A2Q9NP94 309 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.94■□□□□ 0.3
VPS39-203ENST00000561797 DNMT3BQ9UBC3 853 aaKnown RBP16.94■□□□□ 0.3
VPS39-203ENST00000561797 ATP6V1DQ9Y5K8 247 aa16.94■□□□□ 0.3
VPS39-203ENST00000561797 PVALEFA0A1B0GWK0 134 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 ACTN4O43707 911 aaKnown RBP16.93■□□□□ 0.3
VPS39-203ENST00000561797 LAMP2P13473 410 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 TYMPP19971 482 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 TAF6P49848 677 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 EHHADHQ08426 723 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 TDGQ13569 410 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 PABPC1LQ4VXU2 614 aaKnown RBP16.93■□□□□ 0.3
VPS39-203ENST00000561797 RTL10Q7L3V2 364 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 NT5DC4Q86YG4 428 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 TCEAL8Q8IYN2 117 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 ITFG1Q8TB96 612 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 CACTINQ8WUQ7 758 aaKnown RBP16.93■□□□□ 0.3
VPS39-203ENST00000561797 PAGE5Q96GU1 130 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 PGLYRP2Q96PD5 576 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 PDE11AQ9HCR9 933 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 IGSF9Q9P2J2 1179 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 EPS15L1Q9UBC2 864 aa16.93■□□□□ 0.3
VPS39-203ENST00000561797 AFF4Q9UHB7 1163 aaKnown RBP16.93■□□□□ 0.3
VPS39-203ENST00000561797 ARHGEF37A1IGU5 675 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 CYB561D2O14569 222 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 KIAA0391O15091 583 aaKnown RBP16.92■□□□□ 0.3
VPS39-203ENST00000561797 CLIC2O15247 247 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 PDGFBP01127 241 aaPredicted RBP16.92■□□□□ 0.3
VPS39-203ENST00000561797 PTPN2P17706 415 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 PAX3P23760 479 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 SCFD1Q8WVM8 642 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 ING5Q8WYH8 240 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 TMEM209Q96SK2 561 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 SCAND2PQ9GZW5 306 aaPredicted RBP16.92■□□□□ 0.3
VPS39-203ENST00000561797 GDPD2Q9HCC8 539 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 HSPBP1Q9NZL4 362 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 AGAP1Q9UPQ3 857 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 INSL5Q9Y5Q6 135 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 ZNF318Q5VUA4 2279 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 TRIOO75962 3097 aa16.92■□□□□ 0.3
VPS39-203ENST00000561797 ZNF233A6NK53 670 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 OR6C75A6NL08 312 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 TGFB1I1O43294 461 aa16.91■□□□□ 0.3
VPS39-203ENST00000561797 ITGB3P05106 788 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms