RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PRKCQQ04759 706 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 TWF1Q12792 350 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 GRM2Q14416 872 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 MCM6Q14566 821 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 ZBTB6Q15916 424 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 FAM78AQ5JUQ0 283 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 TPGS2Q68CL5 300 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 ZNF280DQ6N043 979 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 TPRG1Q6ZUI0 275 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 KCTD17Q8N5Z5 321 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 APPL2Q8NEU8 664 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 ZSWIM3Q96MP5 696 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 PLEKHA5Q9HAU0 1116 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 LTB4R2Q9NPC1 389 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 LARSQ9P2J5 1176 aaKnown RBP12.67□□□□□ -0.38
USP3-220ENST00000561381 AFF4Q9UHB7 1163 aaKnown RBP12.67□□□□□ -0.38
USP3-220ENST00000561381 KCNG1Q9UIX4 513 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 TBX20Q9UMR3 447 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 SMC3Q9UQE7 1217 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 EP300Q09472 2414 aaPredicted RBP12.67□□□□□ -0.38
USP3-220ENST00000561381 GVINP1Q7Z2Y8 2422 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 SHISA7A6NL88 538 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 K7ENM7 598 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 M0QZQ0 153 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 MOSPD3O75425 235 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 FAM13AO94988 1023 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 LMNAP02545 664 aaKnown RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 CPB1P15086 417 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 PLCG1P19174 1290 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 TARSP26639 723 aaKnown RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 MARCKSP29966 332 aaPredicted RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 UBA7P41226 1012 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 KARSQ15046 597 aaKnown RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 ENOX2Q16206 610 aaKnown RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 LARP1BQ659C4 914 aaKnown RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 SLC39A4Q6P5W5 647 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 PDZD4Q76G19 769 aaPredicted RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 MYCT1Q8N699 235 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 ELSPBP1Q96BH3 223 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 AK8Q96MA6 479 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 PGLYRP2Q96PD5 576 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 CRISPLD1Q9H336 500 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 HEBP1Q9NRV9 189 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 SPATA6Q9NWH7 488 aaPredicted RBP12.66□□□□□ -0.38
USP3-220ENST00000561381 ODF2LQ9ULJ1 636 aa12.66□□□□□ -0.38
USP3-220ENST00000561381 NCANO14594 1321 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 SPTBN4Q9H254 2564 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 A0A0B4J269 797 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 H0YCG3 227 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 ZNF197O14709 1029 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 HNRNPDLO14979 420 aaKnown RBP12.65□□□□□ -0.38
USP3-220ENST00000561381 OAZ2O95190 189 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 PIGRP01833 764 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 MYL4P12829 197 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 NMT1P30419 496 aaKnown RBP12.65□□□□□ -0.38
USP3-220ENST00000561381 AARSP49588 968 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP3-220ENST00000561381 ZNF131P52739 623 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 YWHAHQ04917 246 aaPredicted RBP12.65□□□□□ -0.38
USP3-220ENST00000561381 PPP2R3AQ06190 1150 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 KCNN1Q92952 543 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 CALML4Q96GE6 196 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 ZNF512Q96ME7 567 aaPredicted RBP12.65□□□□□ -0.38
USP3-220ENST00000561381 ASB16Q96NS5 453 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 TMEM209Q96SK2 561 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 FIZ1Q96SL8 496 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 BCO2Q9BYV7 579 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 ZHX3Q9H4I2 956 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 RPF1Q9H9Y2 349 aaKnown RBP12.65□□□□□ -0.38
USP3-220ENST00000561381 PARVGQ9HBI0 331 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 ZFP14Q9HCL3 533 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 UBQLN1Q9UMX0 589 aaKnown RBP12.65□□□□□ -0.38
USP3-220ENST00000561381 YIPF1Q9Y548 306 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 FANCMQ8IYD8 2048 aa12.65□□□□□ -0.38
USP3-220ENST00000561381 F5P12259 2224 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 TISP43B9A030 160 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 ANKRD63C9JTQ0 380 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 SPTLC1O15269 473 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 OGTO15294 1046 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 TRAK2O60296 914 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 MICAL2O94851 1124 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 ADRB2P07550 413 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 NFICP08651 508 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 CYP3A5P20815 502 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 VIPR2P41587 438 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 CDR1P51861 262 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 DUSP4Q13115 394 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 FZD5Q13467 585 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 SF3A1Q15459 793 aaKnown RBP12.64□□□□□ -0.39
USP3-220ENST00000561381 TEAD2Q15562 447 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 ZC2HC1CQ53FD0 456 aaPredicted RBP12.64□□□□□ -0.39
USP3-220ENST00000561381 CYP4A22Q5TCH4 519 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 SPATA1Q5VX52 437 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 JADE1Q6IE81 842 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 IQCEQ6IPM2 695 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 VITQ6UXI7 678 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 DSTYKQ6XUX3 929 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 USP49Q70CQ1 688 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 ELMOD1Q8N336 334 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 TTC9BQ8N6N2 239 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 BEST2Q8NFU1 509 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms