RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ZNF677Q86XU0 584 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 URGCPQ8TCY9 931 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 DIS3LQ8TF46 1054 aaKnown RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 KAT5Q92993 513 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 C18orf25Q96B23 403 aaPredicted RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 DDX27Q96GQ7 796 aaKnown RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 PPP1R13BQ96KQ4 1090 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 ZFP42Q96MM3 310 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 PPP1R10Q96QC0 940 aaKnown RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 MMS19Q96T76 1030 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 GAD1Q99259 594 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 AGPAT1Q99943 283 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 DESI2Q9BSY9 194 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 OSBPL7Q9BZF2 842 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 TSGA10Q9BZW7 698 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 ELAC1Q9H777 363 aaKnown RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 CNTN6Q9UQ52 1028 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 PCDHB7Q9Y5E2 793 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 PCDHA13Q9Y5I0 950 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 PIRO00625 290 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 ENPP3O14638 875 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 NBNO60934 754 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 WEE2P0C1S8 567 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 FAM163BP0C2L3 166 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 PNMA6AP0CW24 399 aaPredicted RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 CYP11B1P15538 503 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 IBSPP21815 317 aaPredicted RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 LRPAP1P30533 357 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 MLH1P40692 756 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 VAV2P52735 878 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 CCL23P55773 120 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 CYP27A1Q02318 531 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 GFPT1Q06210 699 aaPredicted RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 NAB2Q15742 525 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 DNTTIP2Q5QJE6 756 aaKnown RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 CCDC122Q5T0U0 273 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 PPP1R2P3Q6NXS1 205 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 ALKBH5Q6P6C2 394 aaKnown RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 AGMOQ6ZNB7 445 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 ZNF662Q6ZS27 426 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 ZNF598Q86UK7 904 aaKnown RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 RTN4RL1Q86UN2 441 aaPredicted RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 REXO1L1PQ8IX06 675 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 C17orf53Q8N3J3 647 aaPredicted RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 ACRBPQ8NEB7 543 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 DBF4BQ8NFT6 615 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 CXorf38Q8TB03 319 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 RSPH1Q8WYR4 309 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 LPPQ93052 612 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 ELMO3Q96BJ8 720 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 BCO2Q9BYV7 579 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 PPP1R12CQ9BZL4 782 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 MCOLN1Q9GZU1 580 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 PDCL3Q9H2J4 239 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 CISHQ9NSE2 258 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 SEPT11Q9NVA2 429 aaKnown RBP11.02□□□□□ -0.65
USP3-219ENST00000561326 TMEM161AQ9NX61 479 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 TUBGCP4Q9UGJ1 667 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 TBX21Q9UL17 535 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 KIAA1257Q9ULG3 409 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 LRFN2Q9ULH4 789 aa11.02□□□□□ -0.65
USP3-219ENST00000561326 A0A087X0T9 212 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 KPNA7A9QM74 516 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 PTGESO14684 152 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 HOXA2O43364 376 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 KIF5CO60282 957 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 CXCL10P02778 98 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 PAEPP09466 180 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 FAM228BP0C875 321 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 GZMAP12544 262 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 CD58P19256 250 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 ACO1P21399 889 aaKnown RBP11.01□□□□□ -0.65
USP3-219ENST00000561326 CYP2C18P33260 490 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 ASPAP45381 313 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 TAF6P49848 677 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 GUCY2FP51841 1108 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 CDR2Q01850 454 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 GRIK3Q13003 919 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 IKBKEQ14164 716 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 DPH6Q7L8W6 267 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 SLC47A2Q86VL8 602 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 GPIHBP1Q8IV16 184 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 RPUSD2Q8IZ73 545 aaKnown RBP11.01□□□□□ -0.65
USP3-219ENST00000561326 ABI1Q8IZP0 508 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 RBBP8NLQ8NC74 664 aaPredicted RBP11.01□□□□□ -0.65
USP3-219ENST00000561326 SLC30A5Q8TAD4 765 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 EPS8L1Q8TE68 723 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 UROC1Q96N76 676 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 FAM193BQ96PV7 902 aaPredicted RBP11.01□□□□□ -0.65
USP3-219ENST00000561326 ARID3AQ99856 593 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 CXCL16Q9H2A7 254 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 LZTFL1Q9NQ48 299 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 GDAP2Q9NXN4 497 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 NAGPAQ9UK23 515 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 INTUQ9ULD6 942 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 POLIQ9UNA4 740 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 SNX9Q9Y5X1 595 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 UMODL1Q5DID0 1318 aa11.01□□□□□ -0.65
USP3-219ENST00000561326 FNDC1Q4ZHG4 1894 aaPredicted RBP11□□□□□ -0.65
USP3-219ENST00000561326 ARHGEF37A1IGU5 675 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms