RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 WSCD1Q658N2 575 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 EMC1Q8N766 993 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 C12orf29Q8N999 325 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 ADAM32Q8TC27 787 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 GIPC2Q8TF65 315 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 NAPGQ99747 312 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PLVAPQ9BX97 442 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 NT5C1AQ9BXI3 368 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 NUCKS1Q9H1E3 243 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 AGO3Q9H9G7 860 aaKnown RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 CISHQ9NSE2 258 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 INTS13Q9NVM9 706 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 ARGLU1Q9NWB6 273 aaPredicted RBP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SLC27A5Q9Y2P5 690 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.8□□□□□ -1.48
VPS13C-209ENST00000560637 PCDHA13Q9Y5I0 950 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 DUSP10Q9Y6W6 482 aa5.8□□□□□ -1.48
VPS13C-209ENST00000560637 DNAJC25-GNG10A0A024R161 153 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 SRGAP2BP0DMP2 458 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 GARTP22102 1010 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 WEE1P30291 646 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 ABCD1P33897 745 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CRYBB1P53674 252 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MAP3K7CLP57077 242 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MAPK7Q13164 816 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MOGSQ13724 837 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 LONRF2Q1L5Z9 754 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 DCAF4L1Q3SXM0 396 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MORN1Q5T089 497 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 LLGL2Q6P1M3 1020 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TRIM59Q8IWR1 403 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC105Q8IYK2 499 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 REM2Q8IYK8 340 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 PACSIN1Q9BY11 444 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TSPYL2Q9H2G4 693 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CYP4F11Q9HBI6 524 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 DNAJC17Q9NVM6 304 aaKnown RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 DDX43Q9NXZ2 648 aaKnown RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 SMARCAL1Q9NZC9 954 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 STIM2Q9P246 746 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 ASIC3Q9UHC3 531 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 GTF2IRD1Q9UHL9 959 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 GJD2Q9UKL4 321 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 NID2Q14112 1375 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 FAM155AB1AL88 458 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 ARVCFO00192 962 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TSPAN1O60635 241 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 AP1G2O75843 785 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 F2P00734 622 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 SELPP16109 830 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 NDST1P52848 882 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 GTF2BQ00403 316 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 KRT17Q04695 432 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CUL2Q13617 745 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 GOLGA7BQ2TAP0 167 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 NT5DC1Q5TFE4 455 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 PDXDC1Q6P996 788 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 RAD9BQ6WBX8 426 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 PPP1R21Q6ZMI0 780 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 HOOK3Q86VS8 718 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 ADGRF2Q8IZF7 708 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 RYBPQ8N488 228 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM199Q8N511 208 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM40Q8WWA1 233 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 EDEM1Q92611 657 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CYFIP2Q96F07 1278 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 PPP1R13BQ96KQ4 1090 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 LPIN3Q9BQK8 851 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 AP1M1Q9BXS5 423 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 DPH5Q9H2P9 285 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 KIF9Q9HAQ2 790 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 NAGPAQ9UK23 515 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 HEY1Q9Y5J3 304 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 NAV1Q8NEY1 1877 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 SCN4AP35499 1836 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 A0A087X0T9 212 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TLDC2A0PJX2 215 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 UNCXA6NJT0 531 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CLDN5O00501 218 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 PODXLO00592 558 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MED7O43513 233 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CD4P01730 458 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 FAM228BP0C875 321 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CYBAP13498 195 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC130P13994 396 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CTNNB1P35222 781 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 DENND2CQ68D51 928 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 OVOS1Q6IE37 1185 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 LRRC55Q6ZSA7 311 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF410Q86VK4 478 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 BRSK2Q8IWQ3 736 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 UBL4BQ8N7F7 174 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 TNIP3Q96KP6 325 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MBOAT7Q96N66 472 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 CGRRF1Q99675 332 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 NUP85Q9BW27 656 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 C11orf49Q9H6J7 331 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 FAM204AQ9H8W3 233 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 MROH7Q68CQ1 1323 aa5.79□□□□□ -1.48
VPS13C-209ENST00000560637 SMIM35A0A1B0GVV1 85 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms