RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TAS1R2Q8TE23 839 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 BPIFA3Q9BQP9 254 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 XYLT2Q9H1B5 865 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 TMEM8AQ9HCN3 771 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 HIDE1A8MVS5 230 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 M0QZQ0 153 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 HLA-DRAP01903 254 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 GTF2H1P32780 548 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 MXI1P50539 228 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 DSG1Q02413 1049 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 ELAVL2Q12926 359 aaKnown RBP23.45■■□□□ 1.34
SNX1-210ENST00000560260 NCOA4Q13772 614 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.45■■□□□ 1.34
SNX1-210ENST00000560260 ADGRD2Q7Z7M1 963 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 SENP8Q96LD8 212 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 ENTPD7Q9NQZ7 604 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 FANCLQ9NW38 375 aa23.45■■□□□ 1.34
SNX1-210ENST00000560260 LILRB3O75022 631 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 PHACTR2O75167 634 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 POU3F3P20264 500 aaPredicted RBP23.44■■□□□ 1.34
SNX1-210ENST00000560260 PNPLA4P41247 253 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 GLUD2P49448 558 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 ZNF165P49910 485 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 IQCB1Q15051 598 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 USP41Q3LFD5 358 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 SV2CQ496J9 727 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 KIAA0319Q5VV43 1072 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 PRSS55Q6UWB4 352 aaPredicted RBP23.44■■□□□ 1.34
SNX1-210ENST00000560260 TMC7Q7Z402 723 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 SEMA4DQ92854 862 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 HPDLQ96IR7 371 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 PCDHB8Q9UN66 801 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 TIMM13Q9Y5L4 95 aaPredicted RBP23.44■■□□□ 1.34
SNX1-210ENST00000560260 EYSQ5T1H1 3165 aa23.44■■□□□ 1.34
SNX1-210ENST00000560260 PRRC2BQ5JSZ5 2229 aaKnown RBP23.43■■□□□ 1.34
SNX1-210ENST00000560260 KPNA7A9QM74 516 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 C2CD2LO14523 706 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 URODP06132 367 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 IGFBP4P22692 258 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 PIK3CAP42336 1068 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 PTPROQ16827 1216 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 KRT39Q6A163 491 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 DSTYKQ6XUX3 929 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 CEP57Q86XR8 500 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 RIN2Q8WYP3 895 aaPredicted RBP23.43■■□□□ 1.34
SNX1-210ENST00000560260 GAS2L1Q99501 681 aaPredicted RBP23.43■■□□□ 1.34
SNX1-210ENST00000560260 TTPALQ9BTX7 342 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 NAT10Q9H0A0 1025 aaKnown RBP23.43■■□□□ 1.34
SNX1-210ENST00000560260 CBX8Q9HC52 389 aa23.43■■□□□ 1.34
SNX1-210ENST00000560260 C2orf71A6NGG8 1288 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 KCNJ18B7U540 433 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 TRAPPC3O43617 180 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 STX10O60499 249 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 STAU1O95793 577 aaKnown RBP23.42■■□□□ 1.34
SNX1-210ENST00000560260 ZNF18P17022 549 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 FMO5P49326 533 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 TRPC3Q13507 836 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 KCNJ12Q14500 433 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 SMC1AQ14683 1233 aaKnown RBP23.42■■□□□ 1.34
SNX1-210ENST00000560260 SPOPLQ6IQ16 392 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 LRSAM1Q6UWE0 723 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 CREBRFQ8IUR6 639 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 FAM114A1Q8IWE2 563 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 LNX1Q8TBB1 728 aaPredicted RBP23.42■■□□□ 1.34
SNX1-210ENST00000560260 PIK3R5Q8WYR1 880 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 PI4K2AQ9BTU6 479 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 NGRNQ9NPE2 291 aaKnown RBP23.42■■□□□ 1.34
SNX1-210ENST00000560260 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.42■■□□□ 1.34
SNX1-210ENST00000560260 LMCD1Q9NZU5 365 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 STK39Q9UEW8 545 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 L1RE1Q9UN81 338 aa23.42■■□□□ 1.34
SNX1-210ENST00000560260 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.42■■□□□ 1.34
SNX1-210ENST00000560260 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.41■■□□□ 1.34
SNX1-210ENST00000560260 CYB561D2O14569 222 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 SYN3O14994 580 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 CXCL14O95715 111 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 MTIF2P46199 727 aaKnown RBP23.41■■□□□ 1.34
SNX1-210ENST00000560260 MYL7Q01449 175 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 KCNH2Q12809 1159 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 TCP11X2Q5H9J9 407 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 VARS2Q5ST30 1063 aaKnown RBP23.41■■□□□ 1.34
SNX1-210ENST00000560260 MRPL43Q8N983 215 aaKnown RBP23.41■■□□□ 1.34
SNX1-210ENST00000560260 MICAL1Q8TDZ2 1067 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 VRTNQ9H8Y1 702 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 APOBEC3GQ9HC16 384 aaKnown RBP23.41■■□□□ 1.34
SNX1-210ENST00000560260 GDAP2Q9NXN4 497 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 POLIQ9UNA4 740 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 COQ4Q9Y3A0 265 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 SNX9Q9Y5X1 595 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 IRAK3Q9Y616 596 aa23.41■■□□□ 1.34
SNX1-210ENST00000560260 ASS1P00966 412 aaKnown RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 AFPP02771 609 aaKnown RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 FOSL2P15408 326 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 RPL17P18621 184 aaKnown RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 PAX3P23760 479 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 ZNF445P59923 1031 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 MRPL58Q14197 206 aaKnown RBP23.4■■□□□ 1.34
SNX1-210ENST00000560260 ZNF699Q32M78 642 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 TCEAL5Q5H9L2 206 aa23.4■■□□□ 1.34
SNX1-210ENST00000560260 MIIPQ5JXC2 388 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms