RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ELSPBP1Q96BH3 223 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 RPP25Q9BUL9 199 aaKnown RBP13.64□□□□□ -0.23
SNX1-209ENST00000559961 TRMT61BQ9BVS5 477 aaKnown RBP13.64□□□□□ -0.23
SNX1-209ENST00000559961 ZSCAN16Q9H4T2 348 aaPredicted RBP13.64□□□□□ -0.23
SNX1-209ENST00000559961 ASB7Q9H672 318 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 BRD9Q9H8M2 597 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 BLOC1S4Q9NUP1 217 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 AGO2Q9UKV8 859 aaKnown RBP13.64□□□□□ -0.23
SNX1-209ENST00000559961 PCDHB13Q9Y5F0 798 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 TIMM13Q9Y5L4 95 aaPredicted RBP13.64□□□□□ -0.23
SNX1-209ENST00000559961 SRPRBQ9Y5M8 271 aaKnown RBP13.64□□□□□ -0.23
SNX1-209ENST00000559961 ZDBF2Q9HCK1 2354 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 ZNF318Q5VUA4 2279 aa13.64□□□□□ -0.23
SNX1-209ENST00000559961 MYO10Q9HD67 2058 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 PIEZO1Q92508 2521 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 A0A0B4J269 797 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 FAM170BA6NMN3 283 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 MAN2B1O00754 1011 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 DPYSL4O14531 572 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 LAMTOR5O43504 91 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 TBC1D4O60343 1298 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 IL18RAPO95256 599 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 LDHAP00338 332 aaKnown RBP13.63□□□□□ -0.23
SNX1-209ENST00000559961 TYMPP19971 482 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 NMT1P30419 496 aaKnown RBP13.63□□□□□ -0.23
SNX1-209ENST00000559961 TNFSF9P41273 254 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 POU5F1Q01860 360 aaKnown RBP13.63□□□□□ -0.23
SNX1-209ENST00000559961 CUL4AQ13619 759 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 MYBPC2Q14324 1141 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 ENOX2Q16206 610 aaKnown RBP13.63□□□□□ -0.23
SNX1-209ENST00000559961 ARHGAP15Q53QZ3 475 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 SPATA1Q5VX52 437 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 JADE1Q6IE81 842 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 ITIH5Q86UX2 942 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 MAP4K3Q8IVH8 894 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 PJA1Q8NG27 643 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 CACTINQ8WUQ7 758 aaKnown RBP13.63□□□□□ -0.23
SNX1-209ENST00000559961 IRF7Q92985 503 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 BORCS6Q96GS4 357 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 ACCSQ96QU6 501 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 HINFPQ9BQA5 517 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 OSBPL6Q9BZF3 934 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 SPATA6Q9NWH7 488 aaPredicted RBP13.63□□□□□ -0.23
SNX1-209ENST00000559961 ASB3Q9Y575 518 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 CLIC4Q9Y696 253 aa13.63□□□□□ -0.23
SNX1-209ENST00000559961 PRR23AA6NEV1 266 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 SEC24AO95486 1093 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 HSP90AA1P07900 732 aaKnown RBP13.62□□□□□ -0.23
SNX1-209ENST00000559961 IDEP14735 1019 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 CEBPBP17676 345 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 SYT1P21579 422 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 STAT6P42226 847 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 TUFMP49411 452 aaKnown RBP13.62□□□□□ -0.23
SNX1-209ENST00000559961 LILRA4P59901 499 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 GPR17Q13304 367 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 ALCAMQ13740 583 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 PPP2R5DQ14738 602 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 VEPH1Q14D04 833 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 ZBTB6Q15916 424 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 RNF19BQ6ZMZ0 732 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 NT5DC4Q86YG4 428 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 DNASE1L2Q92874 299 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 SMARCD2Q92925 531 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 INTS4Q96HW7 963 aaKnown RBP13.62□□□□□ -0.23
SNX1-209ENST00000559961 EPSTI1Q96J88 318 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 SENP8Q96LD8 212 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 PGLYRP2Q96PD5 576 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 GCNAQ96QF7 691 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 FOXQ1Q9C009 403 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 ST6GALNAC4Q9H4F1 302 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 CPSF3Q9UKF6 684 aaKnown RBP13.62□□□□□ -0.23
SNX1-209ENST00000559961 C2CD2Q9Y426 696 aa13.62□□□□□ -0.23
SNX1-209ENST00000559961 ZNF263O14978 683 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 GCNT3O95395 438 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 LMNAP02545 664 aaKnown RBP13.61□□□□□ -0.23
SNX1-209ENST00000559961 PDIA4P13667 645 aaKnown RBP13.61□□□□□ -0.23
SNX1-209ENST00000559961 PSMC3P17980 439 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 PNPLA4P41247 253 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 ACOT2P49753 483 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 TAF6P49848 677 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 AMPD3Q01432 767 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 SMARCB1Q12824 385 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 DUSP4Q13115 394 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 STK38Q15208 465 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 SV2CQ496J9 727 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 ZC2HC1CQ53FD0 456 aaPredicted RBP13.61□□□□□ -0.23
SNX1-209ENST00000559961 C9orf57Q5W0N0 161 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 TANGO2Q6ICL3 276 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 TPRG1Q6ZUI0 275 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 ZNF720Q7Z2F6 126 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 SFR1Q86XK3 245 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 DCP1BQ8IZD4 617 aaKnown RBP13.61□□□□□ -0.23
SNX1-209ENST00000559961 ADSSL1Q8N142 457 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 CSGALNACT1Q8TDX6 532 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 NOC3LQ8WTT2 800 aaKnown RBP13.61□□□□□ -0.23
SNX1-209ENST00000559961 DEPDC1BQ8WUY9 529 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 ZNF560Q96MR9 790 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 ZNF396Q96N95 335 aaPredicted RBP13.61□□□□□ -0.23
SNX1-209ENST00000559961 DPP3Q9NY33 737 aa13.61□□□□□ -0.23
SNX1-209ENST00000559961 PLXNA3P51805 1871 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms