RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CNGA1P29973 690 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 CIITAP33076 1130 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 PTDSS1P48651 473 aaKnown RBP13.07□□□□□ -0.32
LDLR-205ENST00000557933 RARRES1P49788 294 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 ARSEP51690 589 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 MFAP3P55082 362 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 IL9RQ01113 521 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 CDR2Q01850 454 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 CYP1B1Q16678 543 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 KHDC1Q4VXA5 237 aaKnown RBP13.07□□□□□ -0.32
LDLR-205ENST00000557933 BSNDQ8WZ55 320 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 CCDC17Q96LX7 622 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 MAGEB18Q96M61 343 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 TRAIPQ9BWF2 469 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 MRIQ9BWK5 157 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 TUFT1Q9NNX1 390 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 NEU2Q9Y3R4 380 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 UMODL1Q5DID0 1318 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 HNRNPDLO14979 420 aaKnown RBP13.07□□□□□ -0.32
LDLR-205ENST00000557933 GRIN3BO60391 1043 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 ALADP13716 330 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 HSPA6P17066 643 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 ITIH2P19823 946 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 MAPK6Q16659 721 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 SGSM1Q2NKQ1 1148 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 HHATQ5VTY9 493 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 ANO7Q6IWH7 933 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 TMEM179Q6ZVK1 233 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 MAB21L3Q8N8X9 362 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 LRRC8CQ8TDW0 803 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 SHC3Q92529 594 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 NT5C1BQ96P26 610 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 SYT15Q9BQS2 421 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 OSBPL8Q9BZF1 889 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 TCEAL9Q9UHQ7 104 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 KRT36O76013 467 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 CYP1A2P05177 515 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 RFC5P40937 340 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 PDIA2Q13087 525 aaKnown RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 TMEM270Q6UE05 265 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 MOXD1Q6UVY6 613 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 LRRC6Q86X45 466 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 PHC3Q8NDX5 983 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 DDX1Q92499 740 aaKnown RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 PTPRN2Q92932 1015 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 SLC7A6OSQ96CW6 309 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 DDX27Q96GQ7 796 aaKnown RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 ACCSQ96QU6 501 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ROPN1BQ9BZX4 212 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 GLT8D2Q9H1C3 349 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ROPN1Q9HAT0 212 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 RAB20Q9NX57 234 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 WHRNQ9P202 907 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 SLC17A7Q9P2U7 560 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 TESPA1A2RU30 521 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 TNNI1P19237 187 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 NSFP46459 744 aaKnown RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 POLGP54098 1239 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 ALCAMQ13740 583 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ZNF568Q3ZCX4 644 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ACAD10Q6JQN1 1059 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 OTOAQ7RTW8 1153 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 PODNQ7Z5L7 613 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 RTKN2Q8IZC4 609 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 SCYL3Q8IZE3 742 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ZNF668Q96K58 619 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 MIPEPQ99797 713 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ZNF395Q9H8N7 513 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 DLGAP2Q9P1A6 1054 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 MARCOQ9UEW3 520 aaPredicted RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 YWHABP31946 246 aaKnown RBP13.06□□□□□ -0.32
LDLR-205ENST00000557933 SLC8A3P57103 927 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 PPP2R5CQ13362 524 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 TFDP1Q14186 410 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 CCDC6Q16204 474 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 MUM1Q2TAK8 710 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ZBTB41Q5SVQ8 909 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ARMC3Q5W041 872 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 KRT39Q6A163 491 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 LDHDQ86WU2 507 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 MCOLN2Q8IZK6 566 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 TTLL6Q8N841 843 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 ATL2Q8NHH9 583 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 SHKBP1Q8TBC3 707 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 TMEM109Q9BVC6 243 aa13.06□□□□□ -0.32
LDLR-205ENST00000557933 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.06□□□□□ -0.32
LDLR-205ENST00000557933 F8VP50 259 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 SGK1O00141 431 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 ASMTLO95671 621 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 TPBGLP0DKB5 382 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 GCLCP48506 637 aaPredicted RBP13.05□□□□□ -0.32
LDLR-205ENST00000557933 ORC1Q13415 861 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 SPDYCQ5MJ68 293 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 MFSD7Q6UXD7 560 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 SLC25A41Q8N5S1 370 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 FBXL13Q8NEE6 735 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 SMC6Q96SB8 1091 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 RNPEPL1Q9HAU8 725 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 ZFP69BQ9UJL9 534 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 LTBP3Q9NS15 1303 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms