RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PLXND1Q9Y4D7 1925 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 WDFY3Q8IZQ1 3526 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 SPECC1L-ADORA2AF8WAN1 911 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 TM4SF5O14894 197 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 SYN3O14994 580 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 REC8O95072 547 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 FDPSP14324 419 aaKnown RBP8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 CYP11B2P19099 503 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 CTHP32929 405 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 CNR2P34972 360 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 GRM5P41594 1212 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 LIMK1P53667 647 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 OSTNP61366 133 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 SHC2P98077 582 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 LRRC32Q14392 662 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 ZNF568Q3ZCX4 644 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 XKR4Q5GH76 650 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 TPGS2Q68CL5 300 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 IL31Q6EBC2 164 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 PKN3Q6P5Z2 889 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 ALKAL1Q6UXT8 129 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 RNF19BQ6ZMZ0 732 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 CEP68Q76N32 757 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 TMC8Q8IU68 726 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 GPIHBP1Q8IV16 184 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 ELMOD1Q8N336 334 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 TTC8Q8TAM2 541 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 DDX1Q92499 740 aaKnown RBP8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 C18orf25Q96B23 403 aaPredicted RBP8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 ZFYVE19Q96K21 471 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 LRRC3BQ96PB8 259 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 LRRC3Q9BY71 257 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 TM6SF1Q9BZW5 370 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 CRISPLD1Q9H336 500 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 SMOC1Q9H4F8 434 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 SLITRK6Q9H5Y7 841 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 PDRG1Q9NUG6 133 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 ORC3Q9UBD5 711 aaPredicted RBP8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 AFF4Q9UHB7 1163 aaKnown RBP8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 TPCN1Q9ULQ1 816 aa8.96□□□□□ -0.98
CCDC88C-214ENST00000557507 A0A1W2PRU2 124 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 MYBPHLA2RUH7 354 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 ARHGEF35A5YM69 484 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 BTBD18B2RXH4 712 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 H7C4K7 107 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 AXIN1O15169 862 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 CHADO15335 359 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 FOXD2O60548 495 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 PFKFB2O60825 505 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 EPN2O95208 641 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 CPB1P15086 417 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 MCM4P33991 863 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 KPNA1P52294 538 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 FOSBP53539 338 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 MLLT6P55198 1093 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 FCHO2Q0JRZ9 810 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 CCINQ13939 588 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 PON2Q15165 354 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 PPP2R5AQ15172 486 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 IQCEQ6IPM2 695 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 ZNF280DQ6N043 979 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 TAS1R3Q7RTX0 852 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 WDR5BQ86VZ2 330 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 YAF2Q8IY57 180 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 LEMD2Q8NC56 503 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 CSGALNACT1Q8TDX6 532 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 MSANTD3Q96H12 275 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 SUSD3Q96L08 255 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 ZNF512Q96ME7 567 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 PGLYRP2Q96PD5 576 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 NACC1Q96RE7 527 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 MKNK1Q9BUB5 465 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 POLR3CQ9BUI4 534 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 CCDC94Q9BW85 323 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 DNAJC25Q9H1X3 360 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 ARRDC1-AS1Q9H2J1 176 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 PTPRHQ9HD43 1115 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 TOPORSQ9NS56 1045 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 GTSE1Q9NYZ3 720 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 TNFSF13BQ9Y275 285 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 NUB1Q9Y5A7 615 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 PHLPP2Q6ZVD8 1323 aa8.95□□□□□ -0.98
CCDC88C-214ENST00000557507 ABLIM1O14639 778 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 EXTL3O43909 919 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 LARGE1O95461 756 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 PRAMEF12O95522 483 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 OR4Q2P0C623 313 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 ZNF806P0C7X5 589 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 HOXB3P14651 431 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 KCNE1P15382 129 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 RPA1P27694 616 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 HOXA6P31267 233 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 RAP1GAPP47736 663 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 PXNP49023 591 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 EFNA5P52803 228 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 YARSP54577 528 aaKnown RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 COL9A2Q14055 689 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 ECM1Q16610 540 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 DGKKQ5KSL6 1271 aa8.94□□□□□ -0.98
CCDC88C-214ENST00000557507 STPG1Q5TH74 334 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms