RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 DGAT1O75907 488 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 CCT6AP40227 531 aaKnown RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 RARRES1P49788 294 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 FOXC1Q12948 553 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 ORC2Q13416 577 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 IQCB1Q15051 598 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 PABPC1LQ4VXU2 614 aaKnown RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 SRGAP1Q7Z6B7 1085 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 LUZP1Q86V48 1076 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 CEP57L1Q8IYX8 460 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 C12orf50Q8NA57 414 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 LNX1Q8TBB1 728 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 ELSPBP1Q96BH3 223 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 CLIC6Q96NY7 704 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 BPIFA3Q9BQP9 254 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 POLR3CQ9BUI4 534 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 EIF2AQ9BY44 585 aaKnown RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 ADAM33Q9BZ11 813 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 NAT10Q9H0A0 1025 aaKnown RBP13.68□□□□□ -0.22
SHMT2-230ENST00000557427 POLD4Q9HCU8 107 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 TUFT1Q9NNX1 390 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 ADAM28Q9UKQ2 775 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 KCNH3Q9ULD8 1083 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 IPPQ9Y573 584 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 LOC400499M0QZD8 3231 aa13.68□□□□□ -0.22
SHMT2-230ENST00000557427 LAMA5O15230 3695 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 USO1O60763 962 aaKnown RBP13.67□□□□□ -0.22
SHMT2-230ENST00000557427 ITGA4P13612 1032 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 CLCN1P35523 988 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 ARL2P36404 184 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 NLRP12P59046 1061 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 MXD4Q14582 209 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-230ENST00000557427 ECM1Q16610 540 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 PLA2G2CQ5R387 149 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 LIN9Q5TKA1 542 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 KRBA2Q6ZNG9 492 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 C11orf57Q6ZUT1 292 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-230ENST00000557427 MAP4K3Q8IVH8 894 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 SPEM1Q8N4L4 309 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 SLC7A14Q8TBB6 771 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 ASAP3Q8TDY4 903 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 PAAF1Q9BRP4 392 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 GPRC5CQ9NQ84 441 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 RBM12Q9NTZ6 932 aaKnown RBP13.67□□□□□ -0.22
SHMT2-230ENST00000557427 HOOK1Q9UJC3 728 aaKnown RBP13.67□□□□□ -0.22
SHMT2-230ENST00000557427 ITPR1Q14643 2758 aa13.67□□□□□ -0.22
SHMT2-230ENST00000557427 TDRD15B5MCY1 1934 aaKnown RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 TMEM8BA6NDV4 472 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 INO80B-WBP1J3KQ70 363 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 AP5Z1O43299 807 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 XYLBO75191 536 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 PAPSS2O95340 614 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 POU2F2P09086 479 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 CEBPBP17676 345 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 RPA1P27694 616 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 CDC25AP30304 524 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 FXR2P51116 673 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 PTENP60484 403 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 ATP2C1P98194 919 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 CREMQ03060 361 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 TFDP1Q14186 410 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 PDIA5Q14554 519 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 ZRSR1Q15695 479 aaKnown RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 IL17AQ16552 155 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 SARM1Q6SZW1 724 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 PADI6Q6TGC4 694 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 DTHD1Q6ZMT9 781 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 Q6ZS52 159 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 CEP68Q76N32 757 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 POLR3FQ9H1D9 316 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 BRD9Q9H8M2 597 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 ZNF334Q9HCZ1 680 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 UBN1Q9NPG3 1134 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 GDE1Q9NZC3 331 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 KIAA1024Q9UPX6 916 aa13.66□□□□□ -0.22
SHMT2-230ENST00000557427 MRPS23Q9Y3D9 190 aaKnown RBP13.66□□□□□ -0.22
SHMT2-230ENST00000557427 TICRRQ7Z2Z1 1910 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 ARHGEF35A5YM69 484 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 PP2D1A8MPX8 630 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 GOLGA6L19H0YKK7 550 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 EPN2O95208 641 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 PTMAP06454 111 aaKnown RBP13.65□□□□□ -0.22
SHMT2-230ENST00000557427 TPM3P06753 285 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 RHOP08100 348 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 GLRA2P23416 452 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 CCNE1P24864 410 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 RAP1GAPP47736 663 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 NOVA1P51513 510 aaKnown RBP13.65□□□□□ -0.22
SHMT2-230ENST00000557427 SOWAHCQ53LP3 525 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-230ENST00000557427 FAM78AQ5JUQ0 283 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 TCEAL6Q6IPX3 200 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 PIK3R5Q8WYR1 880 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 TCEAL3Q969E4 200 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 CPB2Q96IY4 423 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 SCNM1Q9BWG6 230 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 ZKSCAN5Q9Y2L8 839 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 PIAS3Q9Y6X2 628 aa13.65□□□□□ -0.22
SHMT2-230ENST00000557427 ASH1LQ9NR48 2969 aaKnown RBP13.65□□□□□ -0.22
SHMT2-230ENST00000557427 NCANO14594 1321 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 TADA2AO75478 443 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms